Cluster set at subtree whose root is Panthera (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0061418321274 0.940Panthera leo interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
114617741095 0.948Panthera leo RAG1 gene, partial cds, isolate: HS1205.
22461933963 0.994Panthera leo APOB gene for apolipoprotein B, partial cds, isolate: HS1205.
3344110431043 1.000Panthera leo brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
4444111911191 1.000Panthera leo vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
887361245532 0.770Panthera leo 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
999221318608 0.737Panthera pardus orientalis haplotype dv3 NADH dehydrogenase subunit 5 (nd5) gene, partial cds; mitochondrial.
10105121779885 0.933Panthera leo transthyretin intron 1, partial sequence.
11111124612191760 0.480Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
121248111781181 0.999Panthera leo strain plex zinc finger protein Zfx (Zfx) gene, partial cds.
14146817111044 0.957Panthera tigris altaica clone DBH0902 NADH dehydrogenase subunit 2 (NADH2) gene, complete cds; mitochondrial.
1717441957958 0.999Panthera leo Ube1y gene, exon 18 and partial cds.
1818551724755 0.975Panthera pardus orientalis Zfy gene, intron sequence, specimen_voucher: PPA68 (National Cancer Center USA stock).
1919581786840 0.960Panthera leo SMCY gene, intron 4.
2020571654678 0.985Panthera leo krugeri isolate 4_PLE beta fibrinogen (FGB) gene, intron 4.
212156113681375 0.996Panthera leo krugeri isolate PLE NADH dehydrogenase subunit 4 (ND4) gene, partial sequence; mitochondrial.
2222581567567 1.000Panthera pardus orientalis follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
2727571235332 0.942Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
3333451638643 0.998Panthera leo APP gene, partial sequence.
3434441817817 1.000Panthera leo CALB gene, partial sequence.
353544113691369 1.000Panthera leo CLU gene, partial sequence.
3636441517518 1.000Panthera leo CMA1 (CMA1) gene, partial cds.
3737441706708 0.998Panthera leo DGKG2 gene, partial sequence.
3838441243412 0.897Panthera leo FES gene, partial sequence.
3939441441457 0.974Panthera leo GATA3 gene, partial sequence.
4040441670670 1.000Panthera leo GHR (GHR) gene, partial cds.
4141441622622 1.000Panthera leo GNAZ (GNAZ) gene, partial cds.
4242441674674 1.000Panthera leo GNB1 gene, partial sequence.
4343441345349 0.996Panthera leo HK1 gene, partial sequence.
4444441295296 0.999Panthera leo NCL (NCL) gene, partial cds.
4545441290290 1.000Panthera leo PNOC (PNOC) gene, partial cds.
4646451430473 0.982Panthera leo RAG2 (RAG2) gene, partial cds.
4747441551551 1.000Panthera leo RSA2 gene, partial sequence.
4848441371371 1.000Panthera leo SIL gene, partial sequence.
4949441589594 0.997Panthera leo TCP1 (TCP1) gene, partial cds.
5050441513513 1.000Panthera leo ALAS gene, partial sequence.
5151441670670 1.000Panthera leo ATP-7A (ATP7A) gene, partial cds.
5252441318318 1.000Panthera leo IL2RG (IL2RG) gene, partial cds.
5353441766899 0.926Panthera leo PLP gene, partial sequence.
5454571844844 1.000Panthera pardus orientalis Zfx gene, intron sequence, specimen_voucher: PPA64 (National Cancer Center USA stock).
555544126592719 0.984Panthera leo sex-determining region Y protein (SRY) gene, complete cds.
57577101339894 0.780Panthera leo prion protein (PRNP) gene, complete cds.
59596361139144 0.991Panthera leo atrox isolate IB177 ATPase 8 (ATP8) gene, partial cds; mitochondrial.
6262441386639 0.711Panthera leo UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
6363441749751 0.999Panthera leo UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
6464441178179 0.999Panthera leo isolate D28 CD44 gene, exon v3 and partial cds, alternatively spliced.
6565551272287 0.967Panthera tigris amoyensis microsatellite PTA sequence.
787844165516686 0.992Panthera leo clone PLE1 carboxylesterase 7-like gene, complete sequence.
79796121644909 0.828Panthera tigris tigris cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial.
828244114221422 1.000Panthera pardus saxicolor endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
868674113031025 0.529P.leo mitochondrial 12S rRNA gene.
113117481609610 1.000Panthera tigris tigris specimen-voucher Menghu1 cytochrome b (cytb) gene, partial cds; mitochondrial.
117121471336337 0.998Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.
1931114101172408 0.688Panthera tigris tigris haplotype TIG-CCR2 control region, partial sequence; mitochondrial.
244241441405406 0.999Panthera leo krugeri isolate 13-15a_PLE chromosome Y DDX3Y gene, partial sequence.
245242441288288 1.000Panthera leo krugeri isolate 13-15b_PLE chromosome Y DDX3Y gene, partial sequence.
246243441296296 1.000Panthera leo krugeri isolate 16_PLE chromosome Y DDX3Y gene, intron 16.
247244441433433 1.000Panthera leo krugeri isolate 3_PLE chromosome Y DDX3Y gene, intron 3.
248245441287291 0.996Panthera leo krugeri isolate 1a_PLE chromosome Y EIF1AY gene, intron 1.
249246441254254 1.000Panthera leo krugeri isolate 1b_PLE chromosome Y EIF1AY gene, intron 1.
250247441388390 0.999Panthera leo krugeri isolate 2a_PLE chromosome Y EIF1AY gene, intron 2.
251248441377377 1.000Panthera leo krugeri isolate 2b_PLE chromosome Y EIF1AY gene, intron 2.
252249441284286 0.998Panthera leo krugeri isolate 4_PLE chromosome Y EIF1AY gene, intron 4.
253250441339339 1.000Panthera leo krugeri isolate 8_PLE chromosome Y EIF1AY gene, intron 8.
254251441456456 1.000Panthera leo krugeri isolate 12-13_PLE chromosome Y SNCY gene, partial sequence.
255252441457457 1.000Panthera leo krugeri isolate 13-15_PLE chromosome Y SMCY gene, partial sequence.
256253441464464 1.000Panthera leo krugeri isolate 17_PLE chromosome Y SMCY gene, intron 17.
257254441464465 0.998Panthera leo krugeri isolate 18-19_PLE chromosome Y SMCY gene, partial sequence.
258255441399400 0.999Panthera leo krugeri isolate 19-21_PLE chromosome Y SMCY gene, partial sequence.
259256441459459 1.000Panthera leo krugeri isolate 22-23_PLE chromosome Y SMCY gene, partial sequence.
260257441305305 1.000Panthera leo krugeri isolate 6_PLE chromosome Y SMCY gene, intron 6.
261258441330330 1.000Panthera leo krugeri isolate 10_PLE chromosome Y UBE1Y gene, intron 10.
262259441189189 1.000Panthera leo krugeri isolate 13a_PLE chromosome Y USP9Y gene, intron 13.
263260441456456 1.000Panthera leo krugeri isolate 13b_PLE chromosome Y USP9Y gene, intron 13.
264261441355358 0.994Panthera leo krugeri isolate 14_PLE chromosome Y USP9Y gene, intron 14.
265262451301301 1.000Panthera leo krugeri isolate 16_PLE chromosome Y USP9Y gene, intron 16.
266263441340342 0.999Panthera leo krugeri isolate 18_PLE chromosome Y USP9Y gene, intron 18.
267264441395396 0.999Panthera leo krugeri isolate 2_PLE chromosome Y USP9Y gene, intron 2.
268265441456456 1.000Panthera leo krugeri isolate 23_PLE chromosome Y USP9Y gene, intron 23.
269266441339339 1.000Panthera leo krugeri isolate 31a_PLE chromosome Y USP9Y gene, intron 31.
270267441346346 1.000Panthera leo krugeri isolate 31b_PLE chromosome Y USP9Y gene, intron 31.
271268441457457 1.000Panthera leo krugeri isolate 34_PLE chromosome Y USP9Y gene, intron 34.
272269441378379 0.999Panthera leo krugeri isolate 35_PLE chromosome Y USP9Y gene, intron 35.
273270441442442 1.000Panthera leo krugeri isolate 36_PLE chromosome Y USP9Y gene, intron 36.
274271441460460 1.000Panthera leo krugeri isolate 37_PLE chromosome Y USP9Y gene, intron 37.
275272441410410 1.000Panthera leo krugeri isolate 41_PLE chromosome Y USP9Y gene, intron 41.
276273441384385 0.999Panthera leo krugeri isolate 44_PLE chromosome Y USP9Y gene, intron 44.
277274441418418 1.000Panthera leo krugeri isolate 5_PLE chromosome Y USP9Y gene, intron 5.
278275441456456 1.000Panthera leo krugeri isolate 12_PLE chromosome Y UTY gene, intron 12.
279276441391394 0.997Panthera leo krugeri isolate 13_PLE chromosome Y UTY gene, intron 13.
280277441367367 1.000Panthera leo krugeri isolate 16_PLE chromosome Y UTY gene, intron 16.
281278441351351 1.000Panthera leo krugeri isolate 25_PLE chromosome Y UTY gene, intron 25.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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