| Cluster ID | Parent cluster | TaxIDs | GIs | Genera | Lmin | Lmax | MAD1 | Defline of longest sequence | Tree2 |
|---|
| 0 | 0 | 6 | 14 | 1 | 832 | 1274 | 0.940 | Panthera leo interphotoreceptor retinoid-binding protein (irbp) gene, partial cds. |  |
| 1 | 1 | 4 | 6 | 1 | 774 | 1095 | 0.948 | Panthera leo RAG1 gene, partial cds, isolate: HS1205. | |
| 2 | 2 | 4 | 6 | 1 | 933 | 963 | 0.994 | Panthera leo APOB gene for apolipoprotein B, partial cds, isolate: HS1205. | |
| 3 | 3 | 4 | 4 | 1 | 1043 | 1043 | 1.000 | Panthera leo brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205. | |
| 4 | 4 | 4 | 4 | 1 | 1191 | 1191 | 1.000 | Panthera leo vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205. | |
| 8 | 8 | 7 | 36 | 1 | 245 | 532 | 0.770 | Panthera leo 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. | |
| 9 | 9 | 9 | 22 | 1 | 318 | 608 | 0.737 | Panthera pardus orientalis haplotype dv3 NADH dehydrogenase subunit 5 (nd5) gene, partial cds; mitochondrial. | |
| 10 | 10 | 5 | 12 | 1 | 779 | 885 | 0.933 | Panthera leo transthyretin intron 1, partial sequence. | |
| 11 | 11 | 11 | 246 | 1 | 219 | 1760 | 0.480 | Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial. | |
| 12 | 12 | 4 | 8 | 1 | 1178 | 1181 | 0.999 | Panthera leo strain plex zinc finger protein Zfx (Zfx) gene, partial cds. | |
| 14 | 14 | 6 | 8 | 1 | 711 | 1044 | 0.957 | Panthera tigris altaica clone DBH0902 NADH dehydrogenase subunit 2 (NADH2) gene, complete cds; mitochondrial. | |
| 17 | 17 | 4 | 4 | 1 | 957 | 958 | 0.999 | Panthera leo Ube1y gene, exon 18 and partial cds. | |
| 18 | 18 | 5 | 5 | 1 | 724 | 755 | 0.975 | Panthera pardus orientalis Zfy gene, intron sequence, specimen_voucher: PPA68 (National Cancer Center USA stock). | |
| 19 | 19 | 5 | 8 | 1 | 786 | 840 | 0.960 | Panthera leo SMCY gene, intron 4. | |
| 20 | 20 | 5 | 7 | 1 | 654 | 678 | 0.985 | Panthera leo krugeri isolate 4_PLE beta fibrinogen (FGB) gene, intron 4. | |
| 21 | 21 | 5 | 6 | 1 | 1368 | 1375 | 0.996 | Panthera leo krugeri isolate PLE NADH dehydrogenase subunit 4 (ND4) gene, partial sequence; mitochondrial. | |
| 22 | 22 | 5 | 8 | 1 | 567 | 567 | 1.000 | Panthera pardus orientalis follicle stimulating hormone receptor (FSHR) mRNA, partial cds. | |
| 27 | 27 | 5 | 7 | 1 | 235 | 332 | 0.942 | Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds. | |
| 33 | 33 | 4 | 5 | 1 | 638 | 643 | 0.998 | Panthera leo APP gene, partial sequence. | |
| 34 | 34 | 4 | 4 | 1 | 817 | 817 | 1.000 | Panthera leo CALB gene, partial sequence. | |
| 35 | 35 | 4 | 4 | 1 | 1369 | 1369 | 1.000 | Panthera leo CLU gene, partial sequence. | |
| 36 | 36 | 4 | 4 | 1 | 517 | 518 | 1.000 | Panthera leo CMA1 (CMA1) gene, partial cds. | |
| 37 | 37 | 4 | 4 | 1 | 706 | 708 | 0.998 | Panthera leo DGKG2 gene, partial sequence. | |
| 38 | 38 | 4 | 4 | 1 | 243 | 412 | 0.897 | Panthera leo FES gene, partial sequence. | |
| 39 | 39 | 4 | 4 | 1 | 441 | 457 | 0.974 | Panthera leo GATA3 gene, partial sequence. | |
| 40 | 40 | 4 | 4 | 1 | 670 | 670 | 1.000 | Panthera leo GHR (GHR) gene, partial cds. | |
| 41 | 41 | 4 | 4 | 1 | 622 | 622 | 1.000 | Panthera leo GNAZ (GNAZ) gene, partial cds. | |
| 42 | 42 | 4 | 4 | 1 | 674 | 674 | 1.000 | Panthera leo GNB1 gene, partial sequence. | |
| 43 | 43 | 4 | 4 | 1 | 345 | 349 | 0.996 | Panthera leo HK1 gene, partial sequence. | |
| 44 | 44 | 4 | 4 | 1 | 295 | 296 | 0.999 | Panthera leo NCL (NCL) gene, partial cds. | |
| 45 | 45 | 4 | 4 | 1 | 290 | 290 | 1.000 | Panthera leo PNOC (PNOC) gene, partial cds. | |
| 46 | 46 | 4 | 5 | 1 | 430 | 473 | 0.982 | Panthera leo RAG2 (RAG2) gene, partial cds. | |
| 47 | 47 | 4 | 4 | 1 | 551 | 551 | 1.000 | Panthera leo RSA2 gene, partial sequence. | |
| 48 | 48 | 4 | 4 | 1 | 371 | 371 | 1.000 | Panthera leo SIL gene, partial sequence. | |
| 49 | 49 | 4 | 4 | 1 | 589 | 594 | 0.997 | Panthera leo TCP1 (TCP1) gene, partial cds. | |
| 50 | 50 | 4 | 4 | 1 | 513 | 513 | 1.000 | Panthera leo ALAS gene, partial sequence. | |
| 51 | 51 | 4 | 4 | 1 | 670 | 670 | 1.000 | Panthera leo ATP-7A (ATP7A) gene, partial cds. | |
| 52 | 52 | 4 | 4 | 1 | 318 | 318 | 1.000 | Panthera leo IL2RG (IL2RG) gene, partial cds. | |
| 53 | 53 | 4 | 4 | 1 | 766 | 899 | 0.926 | Panthera leo PLP gene, partial sequence. | |
| 54 | 54 | 5 | 7 | 1 | 844 | 844 | 1.000 | Panthera pardus orientalis Zfx gene, intron sequence, specimen_voucher: PPA64 (National Cancer Center USA stock). | |
| 55 | 55 | 4 | 4 | 1 | 2659 | 2719 | 0.984 | Panthera leo sex-determining region Y protein (SRY) gene, complete cds. | |
| 57 | 57 | 7 | 10 | 1 | 339 | 894 | 0.780 | Panthera leo prion protein (PRNP) gene, complete cds. | |
| 59 | 59 | 6 | 36 | 1 | 139 | 144 | 0.991 | Panthera leo atrox isolate IB177 ATPase 8 (ATP8) gene, partial cds; mitochondrial. | |
| 62 | 62 | 4 | 4 | 1 | 386 | 639 | 0.711 | Panthera leo UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds. | |
| 63 | 63 | 4 | 4 | 1 | 749 | 751 | 0.999 | Panthera leo UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1. | |
| 64 | 64 | 4 | 4 | 1 | 178 | 179 | 0.999 | Panthera leo isolate D28 CD44 gene, exon v3 and partial cds, alternatively spliced. | |
| 65 | 65 | 5 | 5 | 1 | 272 | 287 | 0.967 | Panthera tigris amoyensis microsatellite PTA sequence. | |
| 78 | 78 | 4 | 4 | 1 | 6551 | 6686 | 0.992 | Panthera leo clone PLE1 carboxylesterase 7-like gene, complete sequence. | |
| 79 | 79 | 6 | 12 | 1 | 644 | 909 | 0.828 | Panthera tigris tigris cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial. | |
| 82 | 82 | 4 | 4 | 1 | 1422 | 1422 | 1.000 | Panthera pardus saxicolor endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds. | |
| 86 | 86 | 7 | 41 | 1 | 303 | 1025 | 0.529 | P.leo mitochondrial 12S rRNA gene. | |
| 113 | 117 | 4 | 8 | 1 | 609 | 610 | 1.000 | Panthera tigris tigris specimen-voucher Menghu1 cytochrome b (cytb) gene, partial cds; mitochondrial. | |
| 117 | 121 | 4 | 7 | 1 | 336 | 337 | 0.998 | Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial. | |
| 193 | 111 | 4 | 10 | 1 | 172 | 408 | 0.688 | Panthera tigris tigris haplotype TIG-CCR2 control region, partial sequence; mitochondrial. | |
| 244 | 241 | 4 | 4 | 1 | 405 | 406 | 0.999 | Panthera leo krugeri isolate 13-15a_PLE chromosome Y DDX3Y gene, partial sequence. | |
| 245 | 242 | 4 | 4 | 1 | 288 | 288 | 1.000 | Panthera leo krugeri isolate 13-15b_PLE chromosome Y DDX3Y gene, partial sequence. | |
| 246 | 243 | 4 | 4 | 1 | 296 | 296 | 1.000 | Panthera leo krugeri isolate 16_PLE chromosome Y DDX3Y gene, intron 16. | |
| 247 | 244 | 4 | 4 | 1 | 433 | 433 | 1.000 | Panthera leo krugeri isolate 3_PLE chromosome Y DDX3Y gene, intron 3. | |
| 248 | 245 | 4 | 4 | 1 | 287 | 291 | 0.996 | Panthera leo krugeri isolate 1a_PLE chromosome Y EIF1AY gene, intron 1. | |
| 249 | 246 | 4 | 4 | 1 | 254 | 254 | 1.000 | Panthera leo krugeri isolate 1b_PLE chromosome Y EIF1AY gene, intron 1. | |
| 250 | 247 | 4 | 4 | 1 | 388 | 390 | 0.999 | Panthera leo krugeri isolate 2a_PLE chromosome Y EIF1AY gene, intron 2. | |
| 251 | 248 | 4 | 4 | 1 | 377 | 377 | 1.000 | Panthera leo krugeri isolate 2b_PLE chromosome Y EIF1AY gene, intron 2. | |
| 252 | 249 | 4 | 4 | 1 | 284 | 286 | 0.998 | Panthera leo krugeri isolate 4_PLE chromosome Y EIF1AY gene, intron 4. | |
| 253 | 250 | 4 | 4 | 1 | 339 | 339 | 1.000 | Panthera leo krugeri isolate 8_PLE chromosome Y EIF1AY gene, intron 8. | |
| 254 | 251 | 4 | 4 | 1 | 456 | 456 | 1.000 | Panthera leo krugeri isolate 12-13_PLE chromosome Y SNCY gene, partial sequence. | |
| 255 | 252 | 4 | 4 | 1 | 457 | 457 | 1.000 | Panthera leo krugeri isolate 13-15_PLE chromosome Y SMCY gene, partial sequence. | |
| 256 | 253 | 4 | 4 | 1 | 464 | 464 | 1.000 | Panthera leo krugeri isolate 17_PLE chromosome Y SMCY gene, intron 17. | |
| 257 | 254 | 4 | 4 | 1 | 464 | 465 | 0.998 | Panthera leo krugeri isolate 18-19_PLE chromosome Y SMCY gene, partial sequence. | |
| 258 | 255 | 4 | 4 | 1 | 399 | 400 | 0.999 | Panthera leo krugeri isolate 19-21_PLE chromosome Y SMCY gene, partial sequence. | |
| 259 | 256 | 4 | 4 | 1 | 459 | 459 | 1.000 | Panthera leo krugeri isolate 22-23_PLE chromosome Y SMCY gene, partial sequence. | |
| 260 | 257 | 4 | 4 | 1 | 305 | 305 | 1.000 | Panthera leo krugeri isolate 6_PLE chromosome Y SMCY gene, intron 6. | |
| 261 | 258 | 4 | 4 | 1 | 330 | 330 | 1.000 | Panthera leo krugeri isolate 10_PLE chromosome Y UBE1Y gene, intron 10. | |
| 262 | 259 | 4 | 4 | 1 | 189 | 189 | 1.000 | Panthera leo krugeri isolate 13a_PLE chromosome Y USP9Y gene, intron 13. | |
| 263 | 260 | 4 | 4 | 1 | 456 | 456 | 1.000 | Panthera leo krugeri isolate 13b_PLE chromosome Y USP9Y gene, intron 13. | |
| 264 | 261 | 4 | 4 | 1 | 355 | 358 | 0.994 | Panthera leo krugeri isolate 14_PLE chromosome Y USP9Y gene, intron 14. | |
| 265 | 262 | 4 | 5 | 1 | 301 | 301 | 1.000 | Panthera leo krugeri isolate 16_PLE chromosome Y USP9Y gene, intron 16. | |
| 266 | 263 | 4 | 4 | 1 | 340 | 342 | 0.999 | Panthera leo krugeri isolate 18_PLE chromosome Y USP9Y gene, intron 18. | |
| 267 | 264 | 4 | 4 | 1 | 395 | 396 | 0.999 | Panthera leo krugeri isolate 2_PLE chromosome Y USP9Y gene, intron 2. | |
| 268 | 265 | 4 | 4 | 1 | 456 | 456 | 1.000 | Panthera leo krugeri isolate 23_PLE chromosome Y USP9Y gene, intron 23. | |
| 269 | 266 | 4 | 4 | 1 | 339 | 339 | 1.000 | Panthera leo krugeri isolate 31a_PLE chromosome Y USP9Y gene, intron 31. | |
| 270 | 267 | 4 | 4 | 1 | 346 | 346 | 1.000 | Panthera leo krugeri isolate 31b_PLE chromosome Y USP9Y gene, intron 31. | |
| 271 | 268 | 4 | 4 | 1 | 457 | 457 | 1.000 | Panthera leo krugeri isolate 34_PLE chromosome Y USP9Y gene, intron 34. | |
| 272 | 269 | 4 | 4 | 1 | 378 | 379 | 0.999 | Panthera leo krugeri isolate 35_PLE chromosome Y USP9Y gene, intron 35. | |
| 273 | 270 | 4 | 4 | 1 | 442 | 442 | 1.000 | Panthera leo krugeri isolate 36_PLE chromosome Y USP9Y gene, intron 36. | |
| 274 | 271 | 4 | 4 | 1 | 460 | 460 | 1.000 | Panthera leo krugeri isolate 37_PLE chromosome Y USP9Y gene, intron 37. | |
| 275 | 272 | 4 | 4 | 1 | 410 | 410 | 1.000 | Panthera leo krugeri isolate 41_PLE chromosome Y USP9Y gene, intron 41. | |
| 276 | 273 | 4 | 4 | 1 | 384 | 385 | 0.999 | Panthera leo krugeri isolate 44_PLE chromosome Y USP9Y gene, intron 44. | |
| 277 | 274 | 4 | 4 | 1 | 418 | 418 | 1.000 | Panthera leo krugeri isolate 5_PLE chromosome Y USP9Y gene, intron 5. | |
| 278 | 275 | 4 | 4 | 1 | 456 | 456 | 1.000 | Panthera leo krugeri isolate 12_PLE chromosome Y UTY gene, intron 12. | |
| 279 | 276 | 4 | 4 | 1 | 391 | 394 | 0.997 | Panthera leo krugeri isolate 13_PLE chromosome Y UTY gene, intron 13. | |
| 280 | 277 | 4 | 4 | 1 | 367 | 367 | 1.000 | Panthera leo krugeri isolate 16_PLE chromosome Y UTY gene, intron 16. | |
| 281 | 278 | 4 | 4 | 1 | 351 | 351 | 1.000 | Panthera leo krugeri isolate 25_PLE chromosome Y UTY gene, intron 25. | |
