Cluster set at subtree whose root is Felis (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
006101326614 0.672Felis nigripes 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
1118661318318 1.000Felis nigripes NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
21691496885 0.928Felis nigripes TTR gene, partial sequence.
43551187188 0.999Felis margarita SINE element in Zfy gene, complete sequence.
8742081328546 0.833Felis silvestris partial mitochondrial control region, isolate 3.
111045110321274 0.867Felis bieti interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
141377110712567 0.558Felis libyca Smcy gene, intron 4, complete sequence.
1514771953962 0.998Felis nigripes Ube1y gene, exon 18 and partial cds.
1615771961969 0.998Felis silvestris Zfy gene, intron.
1817781639641 0.998Felis chaus APP gene, partial sequence.
1918781322326 0.999Felis nigripes CHRNA1 gene, partial sequence.
201977113691369 1.000Felis margarita CLU gene, partial sequence.
2120661518518 1.000Felis chaus CMA1 gene, partial sequence.
2221771705706 1.000Felis margarita DGKG2 gene, partial sequence.
2322771412413 0.999Felis libyca FES gene, partial sequence.
2423771441442 0.998Felis libyca GATA3 gene, partial sequence.
2524771665670 0.999Felis margarita GHR (GHR) gene, partial cds.
2625771622622 1.000Felis margarita GNAZ (GNAZ) gene, partial cds.
2726771349349 1.000Felis margarita HK1 gene, partial sequence.
2827771294296 0.994Felis nigripes NCL (NCL) gene, partial cds.
2928771290290 1.000Felis margarita PNOC (PNOC) gene, partial cds.
3029791444777 0.648Felis libyca RAG2 (RAG2) gene, partial cds.
3130771551552 0.998Felis nigripes RSA2 gene, partial sequence.
3231771371371 1.000Felis nigripes SIL gene, partial sequence.
3332661590595 0.998Felis bieti TCP1 (TCP1) gene, partial cds.
3433771513513 1.000Felis chaus ALAS gene, partial sequence.
3534771670670 1.000Felis chaus ATP-7A (ATP7A) gene, partial cds.
3635771318318 1.000Felis chaus IL2RG (IL2RG) gene, partial cds.
3736771899899 1.000Felis libyca PLP gene, partial sequence.
3837771840847 0.996Felis chaus isolate Fch ZFX gene, intron.
393878118952743 0.954Felis chaus sex-determining region Y protein (SRY) gene, complete cds.
41406164118402604 0.980Felis silvestris caffra isolate Fli2A NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Gln gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
454462651376768 0.743Felis chaus endogenous feline leukemia virus clone Fch1139 3' LTR, partial sequence.
5661661674674 1.000Felis margarita GNB1 gene, partial sequence.
631214191401429 0.941Felis chaus haplotype FCh control region, partial sequence; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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