Cluster set at subtree whose root is Felidae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01204211018245614 0.624Smilodon populator isolate ZMA20.041 16S ribosomal RNA gene, partial sequence; mitochondrial.
114375615496885 0.960Prionailurus bengalensis TTR gene, partial sequence.
3130773185188 0.997Felis margarita SINE element in Zfy gene, complete sequence.
47826521411551181 0.997Prionailurus planiceps strain Iplx zinc finger protein Zfx (Zfx) gene, partial cds.
6132281801364355 0.547Felis silvestris mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 90.
726224767190810 0.593Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
824172196831044 0.965Lynx rufus NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
902437108321274 0.931Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
10340531141001760 0.339Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
121343842167852567 0.363Felis libyca Smcy gene, intron 4, complete sequence.
131353535159401197 0.806Otocolobus manul Ube1y gene, exon 18 and partial cds.
14136373916713969 0.798Felis silvestris Zfy gene, intron.
1561554429435 0.994Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
1635364015638643 0.996Neofelis nebulosa APP gene, partial sequence.
1731384516235332 0.974Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
183737371613591373 0.997Otocolobus manul CLU gene, partial sequence.
1975363616515518 1.000Profelis aurata CMA1 (CMA1) gene, partial cds.
2038363616702715 0.987Catopuma badia DGKG2 gene, partial sequence.
2139353516243413 0.984Felis libyca FES gene, partial sequence.
2240363616440457 0.966Leopardus wiedii GATA3 gene, partial sequence.
2341363616665670 1.000Lynx pardinus GHR (GHR) gene, partial cds.
2442373716622622 1.000Felis bieti GNAZ (GNAZ) gene, partial cds.
25137373716206357 0.965Lynx canadensis HK1 gene, partial sequence.
2644373716294296 0.999Lynx rufus NCL (NCL) gene, partial cds.
2745373716290290 1.000Lynx rufus PNOC (PNOC) gene, partial cds.
2846374116423777 0.615Felis silvestris RAG2 (RAG2) gene, partial cds.
2947373716548552 0.998Felis nigripes RSA2 gene, partial sequence.
3048373716371372 0.998Leopardus tigrinus SIL gene, partial sequence.
3149363616585601 0.985Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3276373716319513 0.988Felis bieti ALAS gene, partial sequence.
3350373716670670 1.000Felis bieti ATP-7A (ATP7A) gene, partial cds.
3451373716318318 1.000Felis silvestris IL2RG (IL2RG) gene, partial cds.
3552363616766900 0.991Pardofelis marmorata PLP gene, partial sequence.
36138374116823927 0.911Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
3713936371618952792 0.969Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.
3814062155611882 0.784Panthera leo haplotype H1 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
39301234543702604 0.623Felis silvestris silvestris isolate Fsi257 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Glu gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
40795926091140 0.587Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.
4114111116188287 0.928Panthera tigris amoyensis microsatellite PTA sequence.
421421830910235246 0.967Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0302 allele, exon 2 and partial cds.
4314362651376768 0.743Felis chaus endogenous feline leukemia virus clone Fch1139 3' LTR, partial sequence.
55282479122791025 0.489Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
561514178654893 0.773Otocolobus manul beta fibrinogen gene, intron 7.
57161416913681378 0.994Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
581559135567567 1.000Panthera leo isolate 21 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
5936333316813821 0.995Profelis aurata CALB gene, partial sequence.
6043333315573674 0.977Prionailurus rubiginosa GNB1 gene, partial sequence.
621576144549870 0.687Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
631586745821119 0.617Panthera leo bleyenberghi apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
6464996178179 0.999Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.
6733794446652 0.933Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
7558184495961545 0.510Prionailurus planiceps isolate FHCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
7616857413141616 0.840Panthera leo bleyenberghi apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
7754675321368 0.934Acinonyx jubatus adenosine A3 receptor (ADORA3) gene, partial cds.
78210155933963 0.986Leopardus pardalis APOB gene for apolipoprotein B, partial cds, isolate: HS1229.
79556105557744 0.778Lynx canadensis brain-derived neurotrophic factor (BDNF) gene, exon 1 and partial cds.
8056555672688 0.991Lynx lynx FBN1 gene, partial sequence.
81118785727763 0.980Neofelis nebulosa androgen receptor (AR) gene, partial cds.
8216922221463406686 0.981Neofelis nebulosa clone NNE1 carboxylesterase 7-like gene, complete sequence.
85172795887927 0.975Felis margarita Hox8 early enhancer sequence.
8617314677172441 0.883Acinonyx jubatus isolate S1571 control region, partial sequence; mitochondrial.
89175795712987 0.954Panthera tigris altaica G protein-coupled receptor 33 (GPR33) gene, GPR33-A allele, partial sequence.
90176775327361 0.972Acinonyx jubatus EPM2B gene repeat region, partial sequence.
9262171710386639 0.675Leptailurus serval UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
93631818116361720 0.501Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
956615278339950 0.818Lynx rufus prion protein (PRNP) gene, complete cds.
96179674878908 0.985Panthera leo isolate PleoTA4 trace amine-associated receptor 4 (TAAR4) gene, partial cds.
9970444289291 0.998Acinonyx jubatus protein tyrosine phosphatase receptor type G (PTPRG) gene, partial cds.
101183822615031668 0.906Panthera tigris altaica isolate PTI_72 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
103191557721112 0.927Lynx canadensis recombination activating protein 1 (RAG1) gene, exon 1 and partial cds.
10448846781043 0.956Panthera leo brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
105589411911209 0.987Prionailurus iriomotensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
1061855163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
107186101516187266 0.956Panthera leo persica clone M622 MHC class I antigen gene, exon 2 and partial cds.
10818791096218246 0.980Panthera leo persica clone 149 MHC class I antigen gene, exon 3 and partial cds.
113116454344405 0.939Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.
115113454316317 0.999Lynx canadensis phospholipase C beta 4 (PLCB4) gene, 3' UTR.
1211921010923102310 1.000Otocolobus manul transferrin receptor protein 1 (TFRC) mRNA, complete cds.
1261984329817159608 0.741Panthera pardus orientalis haplotype dv3 NADH dehydrogenase subunit 5 (nd5) gene, partial cds; mitochondrial.
127197473107133 0.899Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.
12859552447579 0.864Felis chaus VEGF165 isoform-like mRNA, partial sequence.
12960442443443 1.000Panthera leo ubiquitin carboxyl-terminal hydrolase L1 mRNA, partial cds.
138207554684684 1.000Prionailurus planiceps isolate FHCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
1392086124737790 0.972Panthera tigris tigris isolate Ptt02 cytochrome c oxidase subunit III (COIII) gene, partial cds; mitochondrial.
1412105103347459 0.949Panthera tigris altaica isolate Pta01 NADH dehydrogenase subunit 3 (ND3) gene, partial cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, partial cds; mitochondrial.
147213664272272 1.000Panthera leo rhodopsin (RHO1) gene, partial cds.
183249553738824 0.916Panthera leo thiopurine S-methyltransferase mRNA, complete cds.
18625644414731473 1.000Panthera leo persica thiamine transport protein 1 (SLC19A2) mRNA, complete cds.
1886588514221422 1.000Neofelis nebulosa endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
2172864432109210 0.816Panthera leo haplotype T control region, partial sequence; mitochondrial.
22557442360553 0.779Panthera leo beta-actin-like mRNA, partial sequence.
2473175233386428 0.964Panthera leo persica isolate 15 mitochondrial cytochrome b (cytb) gene, partial sequence.
255325471336337 0.998Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.
3242641012179251 0.880Panthera tigris sondaica voucher 65.111.1 control region, partial sequence; mitochondrial.
366434663405407 0.998Neofelis nebulosa nebulosa isolate 13-15a_NNE chromosome Y DDX3Y gene, partial sequence.
367435663288290 0.994Neofelis nebulosa nebulosa isolate 13-15b_NNE chromosome Y DDX3Y gene, partial sequence.
368436663296296 1.000Panthera leo krugeri isolate 16_PLE chromosome Y DDX3Y gene, intron 16.
369437663433435 0.996Neofelis nebulosa nebulosa isolate 3_NNE chromosome Y DDX3Y gene, intron 3.
370438663287292 0.994Neofelis nebulosa nebulosa isolate 1a_NNE chromosome Y EIF1AY gene, intron 1.
371439663254254 1.000Panthera leo krugeri isolate 1b_PLE chromosome Y EIF1AY gene, intron 1.
372440663388391 0.997Neofelis nebulosa nebulosa isolate 2a_NNE chromosome Y EIF1AY gene, intron 2.
373441663377377 1.000Panthera leo krugeri isolate 2b_PLE chromosome Y EIF1AY gene, intron 2.
374442663284396 0.768Neofelis nebulosa nebulosa isolate 4_NNE chromosome Y EIF1AY gene, intron 4.
375443663339339 1.000Panthera leo krugeri isolate 8_PLE chromosome Y EIF1AY gene, intron 8.
376444663456456 1.000Panthera leo krugeri isolate 12-13_PLE chromosome Y SNCY gene, partial sequence.
377445663457457 1.000Panthera leo krugeri isolate 13-15_PLE chromosome Y SMCY gene, partial sequence.
378446663464464 1.000Panthera leo krugeri isolate 17_PLE chromosome Y SMCY gene, intron 17.
379447663464465 0.999Neofelis nebulosa nebulosa isolate 18-19_NNE chromosome Y SMCY gene, partial sequence.
380448663399400 1.000Panthera leo krugeri isolate 19-21_PLE chromosome Y SMCY gene, partial sequence.
381449663459459 1.000Panthera leo krugeri isolate 22-23_PLE chromosome Y SMCY gene, partial sequence.
382450663305305 1.000Panthera leo krugeri isolate 6_PLE chromosome Y SMCY gene, intron 6.
383451663330330 1.000Neofelis nebulosa nebulosa isolate 10_NNE chromosome Y UBE1Y gene, intron 10.
384452663189189 1.000Panthera leo krugeri isolate 13a_PLE chromosome Y USP9Y gene, intron 13.
385453663456456 1.000Panthera leo krugeri isolate 13b_PLE chromosome Y USP9Y gene, intron 13.
386454663354358 0.993Panthera leo krugeri isolate 14_PLE chromosome Y USP9Y gene, intron 14.
387455562298301 0.998Panthera leo krugeri isolate 16_PLE chromosome Y USP9Y gene, intron 16.
388456663338342 0.997Panthera leo krugeri isolate 18_PLE chromosome Y USP9Y gene, intron 18.
389457663385396 0.995Panthera leo krugeri isolate 2_PLE chromosome Y USP9Y gene, intron 2.
390458663456456 1.000Panthera leo krugeri isolate 23_PLE chromosome Y USP9Y gene, intron 23.
391459663338339 1.000Panthera leo krugeri isolate 31a_PLE chromosome Y USP9Y gene, intron 31.
392460663342346 0.997Panthera leo krugeri isolate 31b_PLE chromosome Y USP9Y gene, intron 31.
393461663456457 1.000Panthera leo krugeri isolate 34_PLE chromosome Y USP9Y gene, intron 34.
394462663378380 0.997Neofelis nebulosa nebulosa isolate 35_NNE chromosome Y USP9Y gene, intron 35.
395463663442442 1.000Panthera leo krugeri isolate 36_PLE chromosome Y USP9Y gene, intron 36.
396464663460460 1.000Panthera leo krugeri isolate 37_PLE chromosome Y USP9Y gene, intron 37.
397465663410410 1.000Panthera leo krugeri isolate 41_PLE chromosome Y USP9Y gene, intron 41.
398466663384385 1.000Panthera leo krugeri isolate 44_PLE chromosome Y USP9Y gene, intron 44.
399467663417418 1.000Panthera leo krugeri isolate 5_PLE chromosome Y USP9Y gene, intron 5.
400468663456456 1.000Panthera leo krugeri isolate 12_PLE chromosome Y UTY gene, intron 12.
401469663388394 0.994Panthera leo krugeri isolate 13_PLE chromosome Y UTY gene, intron 13.
402470663367371 0.991Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y UTY gene, intron 16.
403471663351354 0.993Neofelis nebulosa nebulosa isolate 25_NNE chromosome Y UTY gene, intron 25.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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