Cluster set at subtree whose root is Felidae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01204211018245614 0.624Smilodon populator isolate ZMA20.041 16S ribosomal RNA gene, partial sequence; mitochondrial.
114375615496885 0.960Prionailurus bengalensis TTR gene, partial sequence.
21293121555558 0.999Felis silvestris isolate FCSi09-6 BaEV endogenous retrovirus pol and env genes, partial sequence.
3130773185188 0.997Felis margarita SINE element in Zfy gene, complete sequence.
47826521411551181 0.997Prionailurus planiceps strain Iplx zinc finger protein Zfx (Zfx) gene, partial cds.
5131111588588 1.000Felis silvestris CRX protein mRNA, partial cds.
6132281801364355 0.547Felis silvestris mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 90.
726224767190810 0.593Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
824172196831044 0.965Lynx rufus NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
902437108321274 0.931Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
10340531141001760 0.339Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
111333132185301 0.970Felis silvestris haplotype H3 mitochondrion control region, partial sequence.
121343842167852567 0.363Felis libyca Smcy gene, intron 4, complete sequence.
131353535159401197 0.806Otocolobus manul Ube1y gene, exon 18 and partial cds.
14136373916713969 0.798Felis silvestris Zfy gene, intron.
1561554429435 0.994Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
1635364015638643 0.996Neofelis nebulosa APP gene, partial sequence.
1731384516235332 0.974Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
183737371613591373 0.997Otocolobus manul CLU gene, partial sequence.
1975363616515518 1.000Profelis aurata CMA1 (CMA1) gene, partial cds.
2038363616702715 0.987Catopuma badia DGKG2 gene, partial sequence.
2139353516243413 0.984Felis libyca FES gene, partial sequence.
2240363616440457 0.966Leopardus wiedii GATA3 gene, partial sequence.
2341363616665670 1.000Lynx pardinus GHR (GHR) gene, partial cds.
2442373716622622 1.000Felis bieti GNAZ (GNAZ) gene, partial cds.
25137373716206357 0.965Lynx canadensis HK1 gene, partial sequence.
2644373716294296 0.999Lynx rufus NCL (NCL) gene, partial cds.
2745373716290290 1.000Lynx rufus PNOC (PNOC) gene, partial cds.
2846374116423777 0.615Felis silvestris RAG2 (RAG2) gene, partial cds.
2947373716548552 0.998Felis nigripes RSA2 gene, partial sequence.
3048373716371372 0.998Leopardus tigrinus SIL gene, partial sequence.
3149363616585601 0.985Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3276373716319513 0.988Felis bieti ALAS gene, partial sequence.
3350373716670670 1.000Felis bieti ATP-7A (ATP7A) gene, partial cds.
3451373716318318 1.000Felis silvestris IL2RG (IL2RG) gene, partial cds.
3552363616766900 0.991Pardofelis marmorata PLP gene, partial sequence.
36138374116823927 0.911Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
3713936371618952792 0.969Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.
3814062155611882 0.784Panthera leo haplotype H1 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
39301234543702604 0.623Felis silvestris silvestris isolate Fsi257 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Glu gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
40795926091140 0.587Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.
4114111116188287 0.928Panthera tigris amoyensis microsatellite PTA sequence.
421421830910235246 0.967Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0302 allele, exon 2 and partial cds.
4314362651376768 0.743Felis chaus endogenous feline leukemia virus clone Fch1139 3' LTR, partial sequence.
44144141127127 1.000Felis silvestris haplotype SNG-HP-FS16 control region, partial sequence; mitochondrial.
45145111720720 1.000Cat c-myc gene, complete cds.
461462219011326 0.840Cat c-myc gene, complete cds.
4714711112601260 1.000Cat c-myc gene, complete cds.
48148111633633 1.000Felis silvestris aminopeptidase N gene, partial cds.
4914922111251752 0.821Cat c-sis oncogene (platelet-derived growth factor) 5' region.
5015011134253425 1.000Feline mRNA for c-sis proto-oncogene for PDGF beta PDGF = platelet-derived growth factor.
51151111457457 1.000Feline mRNA for preprogastrin.
5215222157327157 0.900Cat ECE1 endogenous retroviral element DNA, partial.
5315311135343534 1.000Cat MHC class I protein (FLA-A-psi) pseudogene, 3' end.
54154111879879 1.000Lynx lynx H19 RNA gene, partial sequence.
55282479122791025 0.489Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
561514178654893 0.773Otocolobus manul beta fibrinogen gene, intron 7.
57161416913681378 0.994Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
581559135567567 1.000Panthera leo isolate 21 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
5936333316813821 0.995Profelis aurata CALB gene, partial sequence.
6043333315573674 0.977Prionailurus rubiginosa GNB1 gene, partial sequence.
6115622229552957 1.000Lynx lynx steroid 21-hydroxylase gene, complete cds.
621576144549870 0.687Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
631586745821119 0.617Panthera leo bleyenberghi apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
6464996178179 0.999Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.
65159111788788 1.000Lynx lynx angio-associated migratory cell protein (AAMP) gene, partial sequence.
66160111483483 1.000Lynx lynx desmin gene, partial cds.
6733794446652 0.933Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
68161111794794 1.000Lynx lynx natural resistance associated macrophage protein (NRAMP1) gene, partial cds.
69162111840840 1.000Lynx lynx nucleoporin Nup107 gene, partial cds.
70163111387387 1.000Lynx lynx phosphodiesterase 6B gene, partial cds.
71164111845845 1.000Lynx lynx SH2 domain protein C1 gene, partial cds.
72165111443443 1.000Lynx lynx serine protease inhibitor Kazal-type 5 (SPINK5) gene, partial cds.
73166111684684 1.000Lynx lynx tyrosine aminotransferase gene, partial cds.
74167111843843 1.000Lynx lynx tyrosine aminotransferase gene, intron.
7558184495961545 0.510Prionailurus planiceps isolate FHCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
7616857413141616 0.840Panthera leo bleyenberghi apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
7754675321368 0.934Acinonyx jubatus adenosine A3 receptor (ADORA3) gene, partial cds.
78210155933963 0.986Leopardus pardalis APOB gene for apolipoprotein B, partial cds, isolate: HS1229.
79556105557744 0.778Lynx canadensis brain-derived neurotrophic factor (BDNF) gene, exon 1 and partial cds.
8056555672688 0.991Lynx lynx FBN1 gene, partial sequence.
81118785727763 0.980Neofelis nebulosa androgen receptor (AR) gene, partial cds.
8216922221463406686 0.981Neofelis nebulosa clone NNE1 carboxylesterase 7-like gene, complete sequence.
831702528101522 0.634Lynx lynx isolate HCroD control region, partial sequence; mitochondrial.
8417111132013201 1.000Acinonyx jubatus Saa1 gene for serum amyloid A 1, complete cds.
85172795887927 0.975Felis margarita Hox8 early enhancer sequence.
8617314677172441 0.883Acinonyx jubatus isolate S1571 control region, partial sequence; mitochondrial.
87121111261261 1.000Acinonyx jubatus isolate AJ 1976 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
88174111310310 1.000Acinonyx jubatus isolate AJ S1571 NADH dehydrogenase subunit 4L and NADH dehydrogenase subunit 4 genes, partial cds; mitochondrial.
89175795712987 0.954Panthera tigris altaica G protein-coupled receptor 33 (GPR33) gene, GPR33-A allele, partial sequence.
90176775327361 0.972Acinonyx jubatus EPM2B gene repeat region, partial sequence.
911773537695 0.872Panthera leo 16S ribosomal RNA gene, partial sequence; mitochondrial.
9262171710386639 0.675Leptailurus serval UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
93631818116361720 0.501Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
94178222338564 0.800Acinonyx jubatus amelogenin (AMELX) gene, exon 6 and partial cds.
956615278339950 0.818Lynx rufus prion protein (PRNP) gene, complete cds.
96179674878908 0.985Panthera leo isolate PleoTA4 trace amine-associated receptor 4 (TAAR4) gene, partial cds.
97180393316567 0.897Panthera leo isolate lion 2 interferon-gamma (IFNG) mRNA, complete cds.
98181242306561 0.801Acinonyx jubatus interleukin-4 mRNA, partial cds.
9970444289291 0.998Acinonyx jubatus protein tyrosine phosphatase receptor type G (PTPRG) gene, partial cds.
1001822222655714 0.961Acinonyx jubatus MHC class I antigen (Acju-MHCI) gene, Acju-MHCI*04 allele, exons 2, 3 and partial cds.
101183822615031668 0.906Panthera tigris altaica isolate PTI_72 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
102184322310381490 0.836Acinonyx jubatus jubatus clone AJUI3 major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.
103191557721112 0.927Lynx canadensis recombination activating protein 1 (RAG1) gene, exon 1 and partial cds.
10448846781043 0.956Panthera leo brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
105589411911209 0.987Prionailurus iriomotensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
1061855163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
107186101516187266 0.956Panthera leo persica clone M622 MHC class I antigen gene, exon 2 and partial cds.
10818791096218246 0.980Panthera leo persica clone 149 MHC class I antigen gene, exon 3 and partial cds.
1091883438261536 0.654Leopardus pardalis beta-2 adrenergic receptor (ADRB2) gene, partial cds.
11067333675675 1.000Leopardus pardalis ATP7A (ATP7A) gene, partial cds.
111110333311311 1.000Leopardus pardalis BMI1 (BMI1) gene, 3' UTR.
1121143439901419 0.773Leopardus pardalis cannabinoid receptor 1 (CNR1) gene, partial cds.
113116454344405 0.939Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.
114115333975975 1.000Leopardus pardalis EDG1 (EDG1) gene, partial cds.
115113454316317 0.999Lynx canadensis phospholipase C beta 4 (PLCB4) gene, 3' UTR.
11669333285285 1.000Leopardus pardalis prepronociceptin (PNOC) gene, partial cds.
117117363426692 0.795Leopardus pardalis tyrosinase (TYR) gene, partial cds.
118189333204204 1.000Leopardus pardalis zinc finger protein ZFX (ZFX) gene, partial cds.
1191901316363 1.000Leopardus pardalis clone BCD cytochrome b gene, partial cds; mitochondrial.
120191272555787 0.920Panthera tigris altaica haplotype PTA04 control region, partial sequence; tRNA-Pro gene, complete sequence; and tRNA-Thr gene, partial sequence; mitochondrial.
1211921010923102310 1.000Otocolobus manul transferrin receptor protein 1 (TFRC) mRNA, complete cds.
122193352317318 0.997Prionailurus bengalensis DBY gene for Y-linked DBY, partial cds, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).
123194232101132 0.84312S rRNA [Smilodon fatalis=saber-toothed cats, Mitochondrial, 132 nt].
124195332728743 0.991Prionailurus viverrinus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
125196111318318 1.000Prionailurus bengalensis iduronate 2-sulfatase gene, partial cds.
1261984329817159608 0.741Panthera pardus orientalis haplotype dv3 NADH dehydrogenase subunit 5 (nd5) gene, partial cds; mitochondrial.
127197473107133 0.899Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.
12859552447579 0.864Felis chaus VEGF165 isoform-like mRNA, partial sequence.
12960442443443 1.000Panthera leo ubiquitin carboxyl-terminal hydrolase L1 mRNA, partial cds.
130199111127127 1.000Lynx canadensis microsatellite Lc106 sequence.
131200111754754 1.000Lynx canadensis microsatellite Lc109 sequence.
132201111106106 1.000Lynx canadensis microsatellite Lc110 sequence.
133202111165165 1.000Lynx canadensis microsatellite Lc111 sequence.
134203111251251 1.000Lynx canadensis microsatellite Lc118 sequence.
135204111249249 1.000Lynx canadensis microsatellite Lc120 sequence.
136205343199338 0.775Lynx canadensis isolate LY3 tooth enamel protein (AMEL) gene, exon 5 and partial cds.
137206222681681 1.000Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete cds; mitochondrial.
138207554684684 1.000Prionailurus planiceps isolate FHCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
1392086124737790 0.972Panthera tigris tigris isolate Ptt02 cytochrome c oxidase subunit III (COIII) gene, partial cds; mitochondrial.
140209333782957 0.939Lynx canadensis NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
1412105103347459 0.949Panthera tigris altaica isolate Pta01 NADH dehydrogenase subunit 3 (ND3) gene, partial cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, partial cds; mitochondrial.
142211222297297 1.000Lynx canadensis NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
14332222320320 1.000Panthera leo collagen type X alpha 1 (COL10A1) gene, partial cds.
144125222434434 1.000Panthera leo transducin alpha 1 (GNAT1) gene, partial cds.
14534333550683 0.935Panthera leo Wilms tumor 1 (WT1) gene, partial cds.
146212111381381 1.000Lynx canadensis feline sarcoma protooncogene (FES) gene, partial cds.
147213664272272 1.000Panthera leo rhodopsin (RHO1) gene, partial cds.
148214222471477 0.994Lynx canadensis feline leukemia virus subgroup C cellular receptor 1 (FLVCR1) gene, intron 7 and partial cds.
149215222588597 0.992Panthera leo peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PPARGC1A) gene, promoter region and partial cds.
150216111702702 1.000Lynx rufus clone bcd1t microsatellite sequence.
151217111489489 1.000Lynx rufus clone bce5t microsatellite sequence.
152218111413413 1.000Lynx rufus clone bcg3d microsatellite sequence.
153219111495495 1.000Lynx rufus clone bcd8t microsatellite sequences.
154220111425425 1.000Lynx rufus clone bcg8t microsatellite sequence.
155221111796796 1.000Lynx rufus clone bch6t microsatellite sequence.
156222111659659 1.000Lynx rufus clone bcb12d microsatellite sequence.
157223111629629 1.000Lynx rufus clone bc1at microsatellite sequence.
158224111484484 1.000Lynx rufus clone bch8t microsatellite sequence.
159225111609609 1.000Lynx rufus clone bch7t microsatellite sequence.
160226111437437 1.000Lynx rufus clone bcg11d microsatellite sequence.
161227111698698 1.000Lynx rufus clone bcg7t microsatellite sequence.
162228111306306 1.000Lynx rufus clone bcg4t microsatellite sequences.
163229111225225 1.000Lynx rufus clone bcf9d microsatellite sequences.
164230111975975 1.000Lynx rufus clone bcf8t microsatellite sequences.
165231111566566 1.000Lynx rufus clone bcf6t microsatellite sequences.
166232111406406 1.000Lynx rufus clone bcf2d microsatellite sequence.
167233111438438 1.000Lynx rufus clone bce9d microsatellite sequence.
168234121545554 0.992Lynx rufus clone bce3d microsatellite sequence.
169235111256256 1.000Lynx rufus clone bce1d microsatellite sequences.
170236111359359 1.000Lynx rufus clone bcd9d microsatellite sequence.
171237121411505 0.907Lynx rufus clone bcc7t microsatellite sequences.
172238111705705 1.000Lynx rufus clone bcd5t microsatellite sequence.
173239111567567 1.000Lynx rufus clone bcd4t microsatellite sequence.
174240111391391 1.000Lynx rufus clone bcd1d microsatellite sequences.
175241111410410 1.000Lynx rufus clone bcc10d microsatellite sequences.
176242111428428 1.000Lynx rufus clone bcc4t microsatellite sequence.
177243111706706 1.000Lynx rufus clone bcb10d microsatellite sequence.
178244111430430 1.000Lynx rufus clone bcb9d microsatellite sequence.
179245111420420 1.000Lynx rufus clone bca12d microsatellite sequence.
180246111441441 1.000Lynx rufus clone bc8bd microsatellite sequence.
181247111389389 1.000Lynx rufus clone bc8a microsatellite sequence.
182248111440440 1.000Lynx rufus clone bc2at microsatellite sequence.
183249553738824 0.916Panthera leo thiopurine S-methyltransferase mRNA, complete cds.
1842501381463464 0.998Lynx rufus isolate WY132 control region, partial sequence; mitochondrial.
1853143133930954 0.997Herpailurus yaguarondi melanocortin-1 receptor (MC1R) gene, complete cds.
18625644414731473 1.000Panthera leo persica thiamine transport protein 1 (SLC19A2) mRNA, complete cds.
187315111229229 1.000Leptailurus serval GTP-binding protein (RAB1A) mRNA, 3' untranslated region.
1886588514221422 1.000Neofelis nebulosa endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
189254222543732 0.871Lynx pardinus relaxin mRNA, complete cds.
19025524213831562 0.943Lynx pardinus cytochrome P450 family 19 subfamily A polypeptide 1 transcript variant 1 (CYP19A1) mRNA, complete cds.
19125735391159 0.911Lynx pardinus isolate F2 control region, partial sequence; mitochondrial.
1922581119292 1.000Lynx pardinus isolate F1 control region, partial sequence; mitochondrial.
19325923212251647 0.829Lynx pardinus 3 beta-hydroxysteroid dehydrogenase (HSD3B1) mRNA, complete cds.
194263111791791 1.000Prionailurus bengalensis euptilurus DNA, isolate: Mk-23, 5'flanking region of Feline endogenous retrovirus ERV-DC7.
19526411110511051 1.000Felis sp. NG192 DNA, INT292 locus sequence.
19626511115181518 1.000Felis sp. NG192 DNA, INT1193 locus sequence.
197266111829829 1.000Felis sp. NG192 DNA, INT1095 locus sequence.
198267111820820 1.000Felis sp. NG192 ATP6AP2 gene, INT0964 locus sequence.
19926811111001100 1.000Felis sp. NG192 FLJ21616 gene, INT1067 locus sequence.
200269111631631 1.000Felis sp. NG192 SCUBE3 gene, INT1075 locus sequence.
201270111531531 1.000Felis sp. NG192 MAEL gene, INT1111 locus sequence.
202271111250250 1.000Felis sp. NG192 EPC1 gene, INT1124 locus sequence.
20327211110261026 1.000Felis sp. NG192 COL3A1 gene, INT1167 locus sequence.
20427311112561256 1.000Felis sp. NG192 EPB41L4A gene, INT1189 locus sequence.
205274111416416 1.000Felis sp. NG192 KIF2 gene, INT1068 locus sequence.
20627511110941094 1.000Felis sp. NG192 LTBP1 gene, INT1098 locus sequence.
207276111722722 1.000Felis sp. NG192 DDX42 gene, INT1122 locus sequence.
208277111787787 1.000Felis sp. NG192 WDR44 gene, INT1233 locus sequence.
209278111718718 1.000Felis sp. NG192 NNT gene, INT276 locus sequence.
210279111696696 1.000Felis sp. NG192 ACSL5 gene, INT391 locus sequence.
211280111221221 1.000Felis silvestris silvestris voucher FSI880 interphotoreceptor retinoid-binding protein (IRBP) gene, exon 1 and partial cds.
212281332621621 1.000Panthera leo TAS1R1 gene for taste receptor type 1 member 1, partial cds.
213282111529529 1.000Panthera leo TAS1R1 gene for taste receptor type 1 member 1, partial cds.
21428333212651570 0.935Panthera leo TAS1R1 gene for taste receptor type 1 member 1, partial cds.
215284222548548 1.000Panthera leo beta-fibrinogen gene, intron 4.
216285332608613 0.995Panthera leo sex-determining region Y protein (sry) gene, partial sequence.
2172864432109210 0.816Panthera leo haplotype T control region, partial sequence; mitochondrial.
218287111893893 1.000Panthera leo melanocortin 4 receptor (MC4R) gene, partial cds.
21928824210621689 0.749Panthera leo chemokine receptor CXCR4 (CXCR4) mRNA, complete cds.
2202892328131057 0.847Panthera leo CD134 (TNFRSF4) mRNA, complete cds.
22129011113221322 1.000Panthera leo haplotype S1 sex-determining region Y protein (SRY) gene, partial cds.
222291131169169 1.000Panthera leo haplotype T3 transferrin (TF) gene, intron 3.
223292151425427 0.999Panthera leo haplotype A4 adenosine deaminase (ADA) gene, exon 10 and partial cds.
224293111909909 1.000Panthera leo arginine vasopressin receptor 2 (AVPR2) gene, partial cds.
22557442360553 0.779Panthera leo beta-actin-like mRNA, partial sequence.
226294222936936 1.000Panthera leo signaling lymphocytic activation molecule family member 1 (SLAMF1) mRNA, partial cds.
2272952111280280 1.000Panthera pardus orientalis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher:PPA59 (National Cancer Center USA stock).
228296121181257 0.852Panthera tigris sumatrae clone 6HDZ3 microsatellite sequence.
229297111204204 1.000Panthera tigris sumatrae clone 6HDZ317 microsatellite sequence.
230298111182182 1.000Panthera tigris sumatrae clone 6HDZ56 microsatellite sequence.
231299111177177 1.000Panthera tigris sumatrae clone 6HDZ610 microsatellite sequence.
232300111167167 1.000Panthera tigris sumatrae clone 6HDZ64 microsatellite sequence.
233301221116137 0.923Panthera tigris sumatrae clone 6HDZ700 microsatellite sequence.
234302111224224 1.000Panthera tigris sumatrae clone 6HDZ817 microsatellite sequence.
235303111218218 1.000Panthera tigris sumatrae clone 6HDZ89 microsatellite sequence.
236304221129138 0.967Panthera tigris sumatrae clone 6HDZ989 microsatellite sequence.
237305111151151 1.000Panthera tigris sumatrae clone 6HDZ993 microsatellite sequence.
238306111180180 1.000Panthera tigris sumatrae microsatellite 6HDZ635 sequence.
239307111117117 1.000Panthera tigris sumatrae clone 6HDZ275 microsatellite sequence.
240308111192192 1.000Panthera tigris sumatrae clone 6HDZ378 microsatellite sequence.
241309111119119 1.000Panthera tigris sumatrae clone 6HDZ463 microsatellite sequence.
242310111163163 1.000Panthera tigris sumatrae clone 6HDZ481 microsatellite sequence.
243311111100100 1.000Panthera tigris sumatrae clone 6HDZ57 microsatellite sequence.
244312111219219 1.000Panthera tigris sumatrae clone 6HDZ170 microsatellite sequence.
245313111267267 1.000Panthera tigris sumatrae clone 6HDZ859 microsatellite sequence.
246316111220220 1.000Neofelis nebulosa voucher Nne80 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial.
2473175233386428 0.964Panthera leo persica isolate 15 mitochondrial cytochrome b (cytb) gene, partial sequence.
2483182202323371 0.989Catopuma temminckii isolate BH_019 cytochrome b (Cytb) gene, partial cds; mitochondrial.
249319242608608 1.000Catopuma temminckii agouti signaling protein (ASIP) gene, complete cds.
250320331669811 0.891Panthera leo persica mitochondrial D-loop, partial sequence.
251321121390390 1.000Panthera tigris altaica follicle stimulating hormone beta subunit (FSH) mRNA, complete cds.
252322232429432 0.995Panthera tigris altaica luteinizing hormone beta subunit precursor, mRNA, complete cds.
253323232363462 0.857Panthera tigris altaica glycoprotein hormone alpha subunit precursor, mRNA, complete cds.
254324111345345 1.000Panthera tigris altaica specimen-voucher Dongbeihu NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
255325471336337 0.998Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.
256326111521521 1.000Panthera tigris altaica insulin-like growth factor I precursor, mRNA, complete cds.
257327121204204 1.000Panthera tigris altaica Sox21 protein (Sox21) gene, partial cds.
258328121204204 1.000Panthera tigris altaica Sox11 protein (Sox11) gene, partial cds.
259329111550550 1.000Panthera tigris altaica clone Pti01 microsatellite sequence.
260330121321324 0.995Panthera tigris altaica clone Pti02 microsatellite sequence.
261331111321321 1.000Panthera tigris altaica clone Pti03 microsatellite sequence.
262332121605934 0.824Panthera tigris altaica clone Pti08 microsatellite sequence.
263333111503503 1.000Panthera tigris altaica clone Pti05 microsatellite sequence.
264334111455455 1.000Panthera tigris altaica clone Pti06 microsatellite sequence.
265335111701701 1.000Panthera tigris altaica clone Pti07 microsatellite sequence.
266336111434434 1.000Panthera tigris altaica clone Pti09 microsatellite sequence.
267337111629629 1.000Panthera tigris altaica clone Pti10 microsatellite sequence.
268338111488488 1.000Panthera tigris altaica clone Pti11 microsatellite sequence.
269339111433433 1.000Panthera tigris altaica clone Pti13 microsatellite sequence.
270340111534534 1.000Panthera tigris altaica clone Pti14 microsatellite sequence.
271341111536536 1.000Panthera tigris altaica clone Pti15 microsatellite sequence.
272342121354358 0.994Panthera tigris altaica clone Pti19 microsatellite sequence.
273343111511511 1.000Panthera tigris altaica clone Pti17 microsatellite sequence.
274344111359359 1.000Panthera tigris altaica clone Pti18 microsatellite sequence.
275345111541541 1.000Panthera tigris altaica clone Pti20 microsatellite sequence.
276346111380380 1.000Panthera tigris altaica clone Pti21 microsatellite sequence.
277347371304314 0.973Panthera tigris tigris isolate Ptt04 ATP synthase F0 subunit 8 (ATP8) and ATP synthase F0 subunit 6 (ATP6) genes, partial cds; mitochondrial.
278348111810810 1.000Panthera tigris altaica cytochrome oxidase subunit I (COI) gene, partial cds; and tRNA-Tyr gene, partial sequence; mitochondrial.
279349391561561 1.000Panthera tigris amoyensis isolate Pts01 NADH dehydrogenase subunit 4 gene, partial cds; mitochondrial.
280350222634949 0.834Panthera tigris altaica clone DBH0901 ferritin (FTH1) mRNA, complete cds.
281351111524524 1.000Panthera tigris altaica clone DBH0903 ribosomal protein L23 (L23) mRNA, complete cds.
28235211111591159 1.000Panthera tigris altaica microsatellite Pti63 sequence.
28335311112161216 1.000Panthera tigris altaica microsatellite Pti13 sequence.
28435411110731073 1.000Panthera tigris altaica microsatellite Pti17 sequence.
285355111538538 1.000Panthera tigris altaica microsatellite Pti12 sequence.
28635611111341134 1.000Panthera tigris altaica microsatellite Pti21 sequence.
287357111323323 1.000Panthera tigris altaica microsatellite Pti18 sequence.
288358111724724 1.000Panthera tigris altaica microsatellite Pti24 sequence.
289359111345345 1.000Panthera tigris altaica microsatellite Pti25 sequences.
290360111594594 1.000Panthera tigris altaica microsatellite Pti27 sequences.
291361111340340 1.000Panthera tigris altaica microsatellite Pti89 sequences.
292362111611611 1.000Panthera tigris altaica microsatellite Pti85 sequence.
293363111699699 1.000Panthera tigris altaica microsatellite Pti5 sequence.
294364111521521 1.000Panthera tigris altaica microsatellite Pti98 sequence.
295365111549549 1.000Panthera tigris altaica microsatellite Pti34 sequence.
296366111528528 1.000Panthera tigris altaica microsatellite Pti20 sequence.
29736711110531053 1.000Panthera tigris altaica microsatellite Pti71 sequence.
298368111917917 1.000Panthera tigris altaica microsatellite Pti15 sequence.
299369111558558 1.000Panthera tigris altaica microsatellite Pti62 sequence.
300370111683683 1.000Panthera tigris altaica microsatellite Pti42 sequence.
301371111463463 1.000Panthera tigris altaica microsatellite Pti36 sequence.
302372111619619 1.000Panthera tigris altaica microsatellite Pti46 sequence.
303373121636858 0.871Panthera tigris altaica microsatellite Pti19 sequence.
30437411112791279 1.000Panthera tigris altaica microsatellite Pti31 sequences.
305375111909909 1.000Panthera tigris altaica microsatellite Pti32 sequences.
3063762261442496 0.895Panthera tigris corbetti mitochondrial partial nd2 gene for NADH dehydrogenase subunit 2, isolate Hanoi Zoo.
30711222219311932 1.000Panthera tigris tigris butyrylcholinesterase precursor (BCHE) mRNA, complete cds.
308377111292292 1.000Panthera tigris tigris clone Ptt11G microsatellite sequence.
309378111150150 1.000Panthera tigris tigris clone Ptt4A microsatellite sequence.
310379111241241 1.000Panthera tigris tigris clone PttA2 microsatellite sequence.
311380111366366 1.000Panthera tigris tigris clone PttA4 microsatellite sequence.
312381111154154 1.000Panthera tigris tigris clone PttB2 microsatellite sequence.
313382111334334 1.000Panthera tigris tigris clone PttB3 microsatellite sequence.
314383111314314 1.000Panthera tigris tigris clone PttC6 microsatellite sequence.
315384111465465 1.000Panthera tigris tigris clone PttD5 microsatellite sequence.
316385111152152 1.000Panthera tigris tigris clone PttD6 microsatellite sequence.
317386111236236 1.000Panthera tigris tigris clone PttE5 microsatellite sequence.
318387111266266 1.000Panthera tigris tigris clone PttF1 microsatellite sequence.
319388111261261 1.000Panthera tigris tigris clone PttF4 microsatellite sequence.
320389111146146 1.000Panthera tigris tigris clone PttG4 microsatellite sequence.
321390111190190 1.000Panthera tigris tigris clone Ptt10H microsatellite sequence.
322391111299299 1.000Panthera tigris tigris clone PttGA2 microsatellite sequence.
323392141145145 1.000Panthera tigris tigris haplotype TIG*10 12S ribosomal RNA gene, partial sequence; mitochondrial.
3242641012179251 0.880Panthera tigris sondaica voucher 65.111.1 control region, partial sequence; mitochondrial.
3253941211131131 1.000Panthera tigris tigris isolate TIG19 NADH dehydrogenase subunit 2 gene, partial cds; mitochondrial.
326395111132132 1.000Panthera leo persica MHC class I antigen gene, partial cds.
327396111343343 1.000Panthera leo persica microsatellite CA20 sequence.
328397111209209 1.000Panthera leo persica microsatellite GA12 sequence.
329398111441441 1.000Panthera leo persica isolate Ple30 microsatellite CA13 sequence.
330399111564564 1.000Panthera leo persica isolate Ple46 microsatellite CA22 sequence.
331400111469469 1.000Panthera leo persica isolate Ple51 microsatellite CT28 sequence.
332401111570570 1.000Panthera leo persica isolate Ple55 microsatellite CA16 sequence.
333402111531531 1.000Panthera leo persica isolate Ple57 microsatellite CA20 sequence.
334403111519519 1.000Panthera leo persica isolate Ple37 microsatellite GT18 sequence.
335404111325325 1.000Panthera leo persica isolate Ple495 microsatellite GTG7 sequence.
336405111324324 1.000Panthera leo persica isolate Ple54 microsatellite CA16 sequence.
337406111506506 1.000Panthera leo persica microsatellite Ple18 sequence.
338407111455455 1.000Panthera leo persica microsatellite Ple19 sequence.
339408111385385 1.000Panthera leo persica microsatellite Ple21 sequence.
340409111317317 1.000Panthera leo persica microsatellite Ple22 sequence.
341410111145145 1.000Panthera leo persica microsatellite Ple34 sequence.
342411111487487 1.000Panthera leo persica microsatellite Ple38 sequence.
343412111386386 1.000Panthera leo persica microsatellite Ple40 sequence.
344413111214214 1.000Panthera leo persica microsatellite Ple44 sequence.
345414111679679 1.000Panthera leo persica microsatellite Ple52 sequence.
346415111416416 1.000Panthera leo persica microsatellite Ple53 sequence.
347416111275275 1.000Panthera leo persica microsatellite Ple56 sequence.
348417111655655 1.000Panthera leo persica microsatellite Ple58 sequence.
349418111378378 1.000Panthera leo persica microsatellite Ple62 sequence.
350419111216216 1.000Panthera leo persica microsatellite Ple65 sequence.
351420111318318 1.000Panthera leo persica microsatellite Ple86 sequence.
352421111377377 1.000Panthera leo persica microsatellite Ple96 sequence.
353422111332332 1.000Panthera leo persica microsatellite Ple251 sequence.
354423111653653 1.000Panthera leo persica microsatellite Ple487 sequence.
355424111398398 1.000Panthera leo persica microsatellite Ple523 sequence.
356425111621621 1.000Panthera leo persica microsatellite Ple537 sequence.
357426111370370 1.000Panthera leo persica microsatellite Ple569 sequence.
358427111304304 1.000Panthera tigris amoyensis clone 2-1c microsatellite sequence.
359428111303303 1.000Panthera tigris amoyensis clone 1-3b microsatellite sequence.
360429111278278 1.000Panthera tigris amoyensis clone 2-1a microsatellite sequence.
361430111313313 1.000Panthera tigris amoyensis clone 4-1c microsatellite sequence.
362431111263263 1.000Panthera tigris amoyensis clone 3-5f microsatellite sequence.
363432111264264 1.000Panthera tigris amoyensis clone 4-4g microsatellite sequence.
364537111145145 1.000Miracinonyx trumani isolate NTC43093 12S ribosomal RNA gene, partial sequence; nuclear copy of mitochondrial sequence.
365433111193193 1.000Panthera onca mesembrina control region, partial sequence; mitochondrial.
366434663405407 0.998Neofelis nebulosa nebulosa isolate 13-15a_NNE chromosome Y DDX3Y gene, partial sequence.
367435663288290 0.994Neofelis nebulosa nebulosa isolate 13-15b_NNE chromosome Y DDX3Y gene, partial sequence.
368436663296296 1.000Panthera leo krugeri isolate 16_PLE chromosome Y DDX3Y gene, intron 16.
369437663433435 0.996Neofelis nebulosa nebulosa isolate 3_NNE chromosome Y DDX3Y gene, intron 3.
370438663287292 0.994Neofelis nebulosa nebulosa isolate 1a_NNE chromosome Y EIF1AY gene, intron 1.
371439663254254 1.000Panthera leo krugeri isolate 1b_PLE chromosome Y EIF1AY gene, intron 1.
372440663388391 0.997Neofelis nebulosa nebulosa isolate 2a_NNE chromosome Y EIF1AY gene, intron 2.
373441663377377 1.000Panthera leo krugeri isolate 2b_PLE chromosome Y EIF1AY gene, intron 2.
374442663284396 0.768Neofelis nebulosa nebulosa isolate 4_NNE chromosome Y EIF1AY gene, intron 4.
375443663339339 1.000Panthera leo krugeri isolate 8_PLE chromosome Y EIF1AY gene, intron 8.
376444663456456 1.000Panthera leo krugeri isolate 12-13_PLE chromosome Y SNCY gene, partial sequence.
377445663457457 1.000Panthera leo krugeri isolate 13-15_PLE chromosome Y SMCY gene, partial sequence.
378446663464464 1.000Panthera leo krugeri isolate 17_PLE chromosome Y SMCY gene, intron 17.
379447663464465 0.999Neofelis nebulosa nebulosa isolate 18-19_NNE chromosome Y SMCY gene, partial sequence.
380448663399400 1.000Panthera leo krugeri isolate 19-21_PLE chromosome Y SMCY gene, partial sequence.
381449663459459 1.000Panthera leo krugeri isolate 22-23_PLE chromosome Y SMCY gene, partial sequence.
382450663305305 1.000Panthera leo krugeri isolate 6_PLE chromosome Y SMCY gene, intron 6.
383451663330330 1.000Neofelis nebulosa nebulosa isolate 10_NNE chromosome Y UBE1Y gene, intron 10.
384452663189189 1.000Panthera leo krugeri isolate 13a_PLE chromosome Y USP9Y gene, intron 13.
385453663456456 1.000Panthera leo krugeri isolate 13b_PLE chromosome Y USP9Y gene, intron 13.
386454663354358 0.993Panthera leo krugeri isolate 14_PLE chromosome Y USP9Y gene, intron 14.
387455562298301 0.998Panthera leo krugeri isolate 16_PLE chromosome Y USP9Y gene, intron 16.
388456663338342 0.997Panthera leo krugeri isolate 18_PLE chromosome Y USP9Y gene, intron 18.
389457663385396 0.995Panthera leo krugeri isolate 2_PLE chromosome Y USP9Y gene, intron 2.
390458663456456 1.000Panthera leo krugeri isolate 23_PLE chromosome Y USP9Y gene, intron 23.
391459663338339 1.000Panthera leo krugeri isolate 31a_PLE chromosome Y USP9Y gene, intron 31.
392460663342346 0.997Panthera leo krugeri isolate 31b_PLE chromosome Y USP9Y gene, intron 31.
393461663456457 1.000Panthera leo krugeri isolate 34_PLE chromosome Y USP9Y gene, intron 34.
394462663378380 0.997Neofelis nebulosa nebulosa isolate 35_NNE chromosome Y USP9Y gene, intron 35.
395463663442442 1.000Panthera leo krugeri isolate 36_PLE chromosome Y USP9Y gene, intron 36.
396464663460460 1.000Panthera leo krugeri isolate 37_PLE chromosome Y USP9Y gene, intron 37.
397465663410410 1.000Panthera leo krugeri isolate 41_PLE chromosome Y USP9Y gene, intron 41.
398466663384385 1.000Panthera leo krugeri isolate 44_PLE chromosome Y USP9Y gene, intron 44.
399467663417418 1.000Panthera leo krugeri isolate 5_PLE chromosome Y USP9Y gene, intron 5.
400468663456456 1.000Panthera leo krugeri isolate 12_PLE chromosome Y UTY gene, intron 12.
401469663388394 0.994Panthera leo krugeri isolate 13_PLE chromosome Y UTY gene, intron 13.
402470663367371 0.991Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y UTY gene, intron 16.
403471663351354 0.993Neofelis nebulosa nebulosa isolate 25_NNE chromosome Y UTY gene, intron 25.
40447211116891689 1.000Panthera leo bleyenberghi partial cryaa gene for putative crystallin, alpha A, exons 1-2.
40547311117421742 1.000Panthera leo bleyenberghi partial cryab gene for putative crystallin, alpha B, exons 1-2.
406474111314314 1.000Panthera leo bleyenberghi partial crybb2 gene for putative crystallin, beta B2, exon 2.
40712611128212821 1.000Panthera leo krugeri G-protein coupled receptor (Tas1r2) pseudogene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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