Cluster set at subtree whose root is Ceratophyllales (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-111676676 1.000Ceratophyllum demersum chloroplast rpl2, trnH, psbA genes, partial cds and complete sequence.
1-11110261026 1.000Ceratophyllum demersum chloroplast rpl2, rps19, rpl22, rps3 genes, partial and complete cds.
2-21117791530 0.613Ceratophyllum demersum maturase K (matK) gene, partial cds; chloroplast gene for chloroplast product.
3-23129113320 0.957Ceratophyllum demersum 26S ribosomal RNA gene, complete sequence.
4-23113931465 0.983Ceratophyllum submersum AtpB (atpB) gene, partial cds; chloroplast gene for chloroplast product.
5-24112391254 0.995Ceratophyllum demersum ATPase alpha subunit (atp1) gene, partial cds; mitochondrial gene for mitochondrial product.
6-12114131415 0.999Ceratophyllum demersum cytochrome oxidase subunit 1 (coxI) gene, partial cds; mitochondrial.
7-11119051905 1.000Ceratophyllum demersum trnT-trnL intergenic spacer, trnL gene and trnL-trnF intergenic spacer sequence.
8-4181612963 0.687Ceratophyllum echinatum isolate 36 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
9-341443665 0.917Ceratophyllum echinatum maturase K (matK) gene, partial cds; chloroplast.
10-341423543 0.835Ceratophyllum demersum from USA trnK gene, intron; chloroplast.
11-111903903 1.000Ceratophyllum demersum petB-petD intergenic spacer, partial sequence; and PetD (petD) gene, intron and partial cds; chloroplast.
12-35117331784 0.985Ceratophyllum echinatum isolate 18 small subunit ribosomal RNA gene, partial sequence.
13-24111771348 0.935Ceratophyllum submersum ribulose-1,5-bisphosphate carboxylase oxygenase (rbcL) gene, partial cds; chloroplast gene for chloroplast product.
14-24116431950 0.922Ceratophyllum demersum small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
15-22133753548 0.976Ceratophyllum demersum large subunit ribosomal RNA gene, partial sequence; mitochondrial.
16-141829858 0.992Ceratophyllum demersum CHS1 gene, partial cds.
17-22111931196 0.999Ceratophyllum submersum NADH dehydrogenase subunit 5 (nad5) gene, partial cds; mitochondrial.
18-22123762419 0.991Ceratophyllum submersum RNA polymerase beta chain (rpoC2) gene, partial cds; chloroplast.
19-11126552655 1.000Ceratophyllum demersum large subunit ribosomal RNA gene, partial sequence; chloroplast.
20-11114751475 1.000Ceratophyllum demersum small subunit ribosomal RNA gene, partial sequence; chloroplast.
21-11110431043 1.000Ceratophyllum demersum apocytochrome b (cob) gene, partial cds; mitochondrial.
22-111359359 1.000Ceratophyllum demersum glutathione reductase (GR) mRNA, partial cds.
23-111841841 1.000Ceratophyllum demersum isolate 1 atpB-rbcL intergenic spacer, partial sequence; chloroplast.
24-11112431243 1.000Ceratophyllum demersum xanthine dehydrogenase (Xdh) gene, partial cds.
25-11130303030 1.000Ceratophyllum demersum RNA polymerase II largest subunit (rpb1) mRNA, partial cds.
26-11116141614 1.000Ceratophyllum demersum RNA polymerase I large subunit mRNA, partial cds.
27-111572572 1.000Ceratophyllum demersum tRNA-Leu (trnL) gene, partial sequence; chloroplast.
28-22115151530 0.995Ceratophyllum demersum ribosomal protein S3 (rps3) gene, partial cds; mitochondrial.
29-11113311331 1.000Ceratophyllum demersum chloroplast partial rps3 gene for small ribosomal protein subunit 3 and partial rpl16 gene for large ribosomal protein subunit 16, isolate N314.
30-11117571757 1.000Ceratophyllum demersum phytochelatin synthase (PCS1) mRNA, complete cds.
31-261542542 1.000Ceratophyllum submersum isolate NMW3925 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast.
32-111312312 1.000Ceratophyllum demersum phytochrome (PHYA) gene, partial cds.
33-111357357 1.000Ceratophyllum demersum phytochrome (PHYA) gene, partial cds.
34-111324324 1.000Ceratophyllum demersum phytochrome (PHYE) gene, partial cds.
35-111766766 1.000C.demersum 28S rRNA gene (partial).
36-111444444 1.000C.demersum chloroplast ndhB mRNA.
37-11137613761 1.000Ceratophyllum demersum ribosomal protein S12 (rps12) gene, partial cds; ribosomal protein S7 (rps7) gene, complete cds; and NADH dehydrogenase subunit B (ndhB) gene, chloroplast genes encoding chloroplast proteins, partial cds.
38-11112671267 1.000Ceratophyllum demersum ribosomal protein L2 (rpl2) gene, partial cds; chloroplast gene for chloroplast product.
39-12112762028 0.815Ceratophyllum demersum NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast gene for chloroplast product.
40-11120612061 1.000Ceratophyllum demersum photosystem II D2 protein (psbD) and photosystem II CP43 protein (psbC) genes, partial cds; chloroplast genes for chloroplast products.
41-111657657 1.000Ceratophyllum demersum cytochrome b-559 alpha subunit (psbE) gene, partial cds; cytochrome b-559 beta subunit (psbF) and photosystem II subunit (psbL) genes, complete cds; and photosystem II subunit (psbJ) gene, partial cds; chloroplast genes for chloroplast products.
42-22112992191 0.796Ceratophyllum demersum photosystem II CP47 protein (psbB) gene, partial cds; photosystem II subunit (psbT) and photosystem II subunit (psbN) genes, complete cds; and photosystem II subunit (psbH) gene, chloroplast genes encoding chloroplast proteins, partial cds.
43-111180180 1.000Ceratophyllum demersum arginine decarboxylase gene, partial cds.
44-111332332 1.000Ceratophyllum demersum mitochondrial protein (rps2) gene, partial cds; mitochondrial gene for mitochondrial product.
45-22118511855 0.999Ceratophyllum demersum maturase (matR) gene, partial cds; mitochondrial gene for mitochondrial product.
46-11113891389 1.000Ceratophyllum demersum phytochrome A (PHYA) gene, partial cds.
47-11110681068 1.000Ceratophyllum demersum phytochrome C (PHYC) gene, partial cds.
48-11120912091 1.000Ceratophyllum sp. SM-2010 photosystem 1 subunit A (psbA) mRNA, partial cds; chloroplast.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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