Cluster set at subtree whose root is unclassified Fungi (rel. 194)

Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).
Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-2626544932 0.685Fungal sp. MS371 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
2-3253703072339 0.352Fungal sp. GMG_C6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
3-44522847 0.837Fungal sp. MS52 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
7-99570750 0.892Ectomycorrhizal root tip 133_Ny1.C-23.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
9-55504801 0.817Mycorrhizal root tip MC1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
12-99371595 0.909Fungal sp. mh1485.1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
17-604882141791621 0.405Fungal endophyte isolate 4119 large subunit ribosomal RNA gene, partial sequence.
18-7475513747 0.831Ectomycorrhizal root tip 238_Ny3.B2-34.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
19-3636389790 0.764Ectomycorrhizal root tip 250_Ny3.C-35.2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
20-1313371621 0.867Ectomycorrhizal root tip 49_Ny1.E1-18.1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
21-55294491 0.884Fungal sp. FG15P2b genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, isolate FG15P2b.
24-55594615 0.990Ectomycorrhiza of Salix reinii genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, and 26S rRNA, clone: FMR1092.
38-2424277574 0.785Fungal sp. CC2 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
39-55491536 0.952Fungal sp. JH101 18S rRNA gene (partial), ITS1, 5.8S rRNA gene ITS2 and 28S rRNA gene (partial), strain JH101.
40-7479508718 0.859Fungal sp. mh1396.3 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
41-3940683687 0.997Fungal sp. K5 gene for 18S rRNA, partial sequence.
46-3333542640 0.928Fungal endophyte strain C6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
47-66397452 0.944Fungal sp. c86 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
51-1818536677 0.873Fungal endophyte sp. g19 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
52-1414364613 0.923Fungal endophyte sp. CEY 12 18S small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S large subunit ribosomal RNA gene, partial sequence.
53-99529635 0.900Fungal endophyte isolate 9279 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
56-66467478 0.987Fungal sp. TRN281 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
57-66506513 0.991Fungal sp. TRN529 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
58-2121481524 0.983Fungal sp. TRN508 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
61-134142280802 0.676Fungal sp. shylm91 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
64-44501544 0.950Fungal sp. TRN471 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence.
73-77603679 0.930Fungal sp. mh2677.4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
76-910415650 0.839Fungal endophyte isolate 282C 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
92-88585806 0.865Fungal endophyte sp. JP12 gene for 18S ribosomal RNA, partial sequence.
93-55535564 0.981Fungal endophyte sp. JP64 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence.
96-55559574 0.980Fungal yeast sp. DY11 26S ribosomal RNA gene, partial sequence.
133-78571975 0.703Fungal endophyte strain 803 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
165-55628645 0.989fungal sp. 5DI9-5PL1 ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5DI9-5PL1.
166-66622622 1.000fungal sp. 5OPS1-10A1 ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5OPS1-10A1.
167-44551552 0.999fungal sp. 5DI12-5B ITS1, 5.8S rRNA, ITS2 and partial 25S rRNA, strain 5DI12-5B.
168-66573880 0.759Fungal sp. MS30 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
176-8989368727 0.890Fungal sp. VI-05M genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S RNA, partial and complete sequence.
194-1216511645 0.885Fungal sp. 132c 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
216-1616423523 0.905Fungal endophyte sp. AP461 partial 18S rRNA gene, ITS1, 5.8S rRNA gene and partial ITS2, isolate AP461.
218-55475522 0.954Fungal endophyte sp. AP234 partial 18S rRNA gene, ITS1, 5.8S rRNA gene and partial ITS2, isolate AP234.
242-88501623 0.935Fungal sp. Z-13 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
262-44903923 0.995Fungal sp. ARIZ B179cB 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
300-558911029 0.968Fungal sp. RS07SK beta-tubulin gene, partial sequence.
309-88665673 0.993Fungal sp. TR-07M genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S RNA, partial and complete sequence.
311-44528561 0.983Fungal sp. DJL6 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
333-44429433 0.998Fungal sp. agrD135 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view