Cluster set at subtree whose root is Chelidae (rel. 194)

Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).
Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00552691694 0.999Phrynops geoffroanus voucher MTD:T:645 recombination activating protein 2 (rag2) gene, partial cds.
1113149342390 0.942Mesoclemmys dahli voucher MTD:T:4699 oocyte maturation factor Mos (Cmos) gene, partial cds.
22772390755 0.883Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
33294113349677 0.667Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
447124417417 1.000Acanthochelys macrocephala isolate AK6593 cytochrome b (cytb) gene, partial cds; mitochondrial.
58312387533777 0.795Mesoclemmys zuliae voucher MTD:T:9154 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; and tRNA-His gene, partial sequence; mitochondrial.
65355114650650 1.000Elseya purvisi isolate 1 from Australia cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
76213013351447 0.877Platemys platycephala voucher MVZ247579 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial.
1312233913266447 0.800Phrynops geoffroanus voucher MTD:T:645 12S ribosomal RNA gene, partial sequence; mitochondrial.
1413104875261094 0.839Mesoclemmys gibba voucher MTD:T:100 cytochrome b (Cytb) gene, partial cds; and tRNA-Thr gene, partial sequence; mitochondrial.
1514111278811154 0.845Platemys platycephala voucher MVZ247579 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
178444427902790 1.000Phrynops gibbus recombination activating gene 1 (RAG-1) gene, partial cds.
403814733224466 0.713Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view