Cluster set at subtree whose root is Chelidae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00552691694 0.999Phrynops geoffroanus voucher MTD:T:645 recombination activating protein 2 (rag2) gene, partial cds.
1113149342390 0.942Mesoclemmys dahli voucher MTD:T:4699 oocyte maturation factor Mos (Cmos) gene, partial cds.
22772390755 0.883Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
33294113349677 0.667Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
447124417417 1.000Acanthochelys macrocephala isolate AK6593 cytochrome b (cytb) gene, partial cds; mitochondrial.
58312387533777 0.795Mesoclemmys zuliae voucher MTD:T:9154 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; and tRNA-His gene, partial sequence; mitochondrial.
65355114650650 1.000Elseya purvisi isolate 1 from Australia cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
76213013351447 0.877Platemys platycephala voucher MVZ247579 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial.
87111876876 1.000Chelodina longicollis atrial natriuretic peptide (ANP) mRNA, complete cds.
98111249249 1.000Chelodina longicollis glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, partial cds.
109111315315 1.000Chelodina longicollis voucher MVZ230488 ornithine decarboxylase antizyme 1 (OAZ1) mRNA, partial cds.
1110111480480 1.000Chelodina longicollis voucher MVZ230488 ribosomal protein L7a (RPL7A) mRNA, partial cds.
1211111377377 1.000Chelodina longicollis voucher MVZ230488 ribosomal protein L11 (RPL11) mRNA, partial cds.
1312233913266447 0.800Phrynops geoffroanus voucher MTD:T:645 12S ribosomal RNA gene, partial sequence; mitochondrial.
1413104875261094 0.839Mesoclemmys gibba voucher MTD:T:100 cytochrome b (Cytb) gene, partial cds; and tRNA-Thr gene, partial sequence; mitochondrial.
1514111278811154 0.845Platemys platycephala voucher MVZ247579 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
1615111773773 1.000Chelodina longicollis B-type natriuretic peptide (BNP) mRNA, complete cds.
178444427902790 1.000Phrynops gibbus recombination activating gene 1 (RAG-1) gene, partial cds.
1816111162162 1.000Chelodina rugosa microsatellite T12 sequence.
1917111124124 1.000Chelodina rugosa microsatellite T14 sequence.
2018111125125 1.000Chelodina rugosa microsatellite T17 sequence.
2119111164164 1.000Chelodina rugosa microsatellite T26 sequence.
2220111162162 1.000Chelodina rugosa microsatellite T42 sequence.
2321111141141 1.000Chelodina rugosa microsatellite T44 sequence.
2422111148148 1.000Chelodina rugosa microsatellite T80 sequence.
2523111146146 1.000Chelodina rugosa microsatellite T87 sequence.
2624111165165 1.000Chelodina rugosa microsatellite T58 sequence.
2725111240240 1.000Chelodina rugosa microsatellite T11 sequence.
2826111369369 1.000Chelodina rugosa microsatellite T15 sequence.
2927111345345 1.000Chelodina rugosa microsatellite T31 sequence.
3028111262262 1.000Chelodina rugosa microsatellite T39 sequence.
3129111223223 1.000Chelodina rugosa microsatellite T41 sequence.
3230111242242 1.000Chelodina rugosa microsatellite T47 sequence.
3331111450450 1.000Chelodina rugosa microsatellite T67 sequence.
3432111138138 1.000Chelodina rugosa microsatellite T27 sequence.
3533111330330 1.000Chelodina rugosa clone T48 microsatellite sequence.
3634121376376 1.000Chelodina rugosa voucher UC:AA20211 control region, partial sequence; mitochondrial.
3735111580580 1.000Chelus fimbriatus voucher HBS109170 anonymous locus TB29 genomic sequence.
3836222678700 0.984Emydura macquarii voucher HBS100714 anonymous locus TB81 genomic sequence.
3937222215215 1.000Chelodina novaeguineae u17 snoRNA gene.
403814733224466 0.713Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.
4139222338338 1.000Phrynops sp. JJF-2012 voucher MVZ247578 ribosomal protein S14 (RPS14) mRNA, partial cds.
4240111421421 1.000Platemys platycephala internal transcribed spacer 2, partial sequence.
434111144804480 1.000Acanthochelys spixii retrotransposon CR1-like LINE, copmlete sequence.
4442131290388 0.907Acanthochelys spixii CR1-like LINE DNA, partial sequence.
454311112121212 1.000Chelodina siebenrocki L-lactate dehydrogenase B (LDH-B) mRNA, complete cds.
4644111999999 1.000Chelodina siebenrocki L-lactate dehydrogenase A (LDH-A) mRNA, complete cds.
4745111475475 1.000Chelodina expansa clone TCE74 microsatellite sequence.
4846111305305 1.000Chelodina expansa clone TCE64 microsatellite sequence.
4947111447447 1.000Chelodina expansa clone TCE76.1 microsatellite sequence.
5048111508508 1.000Chelodina expansa clone TCE89.1 microsatellite sequence.
5149111322322 1.000Chelodina expansa clone TCE86 microsatellite sequence.
5250111363363 1.000Chelodina expansa clone TCE92.1-2 microsatellite sequence.
5351111318318 1.000Chelodina expansa clone TCE70 microsatellite sequence.
5452111422422 1.000Elseya albagula microsatellite Ealb02 sequence.
5553111466466 1.000Elseya albagula microsatellite Ealb05 sequence.
5654111282282 1.000Elseya albagula microsatellite Ealb06 sequence.
5755111325325 1.000Elseya albagula microsatellite Ealb07 sequence.
5856111486486 1.000Elseya albagula microsatellite Ealb09 sequence.
5957111375375 1.000Elseya albagula microsatellite Ealb10 sequence.
6058111497497 1.000Elseya albagula microsatellite Ealb14 sequence.
6159111399399 1.000Elseya albagula microsatellite Ealb15 sequence.
6260111370370 1.000Elseya albagula microsatellite Ealb17 sequence.
6361111273273 1.000Elseya albagula microsatellite Ealb18 sequence.
6462111112112 1.000Elseya albagula microsatellite Ealb19 sequence.
6563111232232 1.000Elseya albagula microsatellite Ealb20 sequence.
6664111293293 1.000Elseya albagula microsatellite Ealb24 sequence.
6765111377377 1.000Elseya albagula microsatellite Ealb25 sequence.
68662152247249 0.994Myuchelys novaeguineae voucher UC:AA042024 NADH dehydrogenase subunit 4 gene, partial cds; tRNA-His and tRNA-Ser genes, complete sequence; and tRNA-Leu gene, partial sequence; mitochondrial.
6967111335335 1.000Emydura macquarii krefftii microsatellite Ekref04 sequence.
7068111379379 1.000Emydura macquarii krefftii microsatellite Ekref06 sequence.
7169111424424 1.000Emydura macquarii krefftii microsatellite Ekref07 sequence.
7270111401401 1.000Emydura macquarii krefftii microsatellite Ekref08 sequence.
7371111421421 1.000Emydura macquarii krefftii microsatellite Ekref09 sequence.
7472111190190 1.000Emydura macquarii krefftii microsatellite Ekref10 sequence.
7573111243243 1.000Emydura macquarii krefftii microsatellite Ekref12 sequence.
7674111374374 1.000Emydura macquarii krefftii microsatellite Ekref13 sequence.
7775111455455 1.000Emydura macquarii krefftii microsatellite Ekref14 sequence.
7876111493493 1.000Emydura macquarii krefftii microsatellite Ekref15 sequence.
7977111194194 1.000Emydura macquarii krefftii microsatellite Ekref17 sequence.
8078111325325 1.000Emydura macquarii krefftii microsatellite Ekref18 sequence.
8179111188188 1.000Emydura macquarii krefftii microsatellite Ekref20 sequence.
8280111329329 1.000Emydura macquarii krefftii microsatellite Ekref21 sequence.
8381111432432 1.000Emydura macquarii krefftii microsatellite Ekref22 sequence.
8482111439439 1.000Emydura macquarii macquarii clone TLE10 microsatellite sequence.
8586111528528 1.000Hydromedusa tectifera mitochondrial control region, partial sequence.
8687111717717 1.000Hydromedusa tectifera brain-derived neurotrophic factor (BDNF) gene, partial cds.
8788111579579 1.000Hydromedusa tectifera neurotrophin-3 (NT-3) gene, partial cds.
8889111373373 1.000Hydromedusa tectifera proopiomelanocortin (POMC) mRNA, partial sequence.
8984111728728 1.000Hydromedusa tectifera recombination activating protein 1 (RAG1) gene, partial cds.
9096141491541 0.950Hydromedusa maximiliani mitochondrial control region, partial sequence.
9197131374391 0.979Hydromedusa maximiliani clone Hmaxmb1b cytochrome b-like gene, partial sequence; mitochondrial gene for mitochondrial product.
92103111188188 1.000Mesoclemmys nasutus NADH dehydrogenase subunit 3 (ND3) gene, partial cds; mitochondrial.
93104111189189 1.000Macrochelodina parkeri NADH dehydrogenase subunit 3 (ND3) gene, partial cds; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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