Cluster set at subtree whose root is Pleurodira (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00309675381193 0.550Phrynops geoffroanus voucher MTD:T:645 recombination activating protein 2 (rag2) gene, partial cds.
11327812254390 0.843Mesoclemmys dahli voucher MTD:T:4699 oocyte maturation factor Mos (Cmos) gene, partial cds.
22772390755 0.883Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
33357018333677 0.678Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
4137124417417 1.000Acanthochelys macrocephala isolate AK6593 cytochrome b (cytb) gene, partial cds; mitochondrial.
55567519650664 0.980Pelusios castanoides voucher REPT_D5946 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
66275118252447 0.899Platemys platycephala voucher MVZ247579 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial.
12125014418266447 0.854Phrynops geoffroanus voucher MTD:T:645 12S ribosomal RNA gene, partial sequence; mitochondrial.
131338300124381094 0.627Mesoclemmys gibba voucher MTD:T:100 cytochrome b (Cytb) gene, partial cds; and tRNA-Thr gene, partial sequence; mitochondrial.
141437125127001154 0.797Platemys platycephala voucher MVZ247579 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
383814733224466 0.713Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.
8343716512533855 0.899Pelusios castanoides mitochondrial ND4 gene (partial), tRNA-His gene and tRNA-Leu gene (partial), specimen voucher MTD T 5497.
84831523105932793 0.605Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
87868156610718 0.960Hydromedusa tectifera brain-derived neurotrophic factor (BDNF) gene, partial cds.
888711126498580 0.987Podocnemis sextuberculata partial nt-3 gene for neurotrophin-3.
8988666373440 0.970Podocnemis expansa proopiomelanocortin (POMC) mRNA, partial sequence.
1562944171324520 0.913Podocnemis unifilis isolate PounA3 mitochondrial control region, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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