Cluster set at subtree whose root is Pleurodira (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00309675381193 0.550Phrynops geoffroanus voucher MTD:T:645 recombination activating protein 2 (rag2) gene, partial cds.
11327812254390 0.843Mesoclemmys dahli voucher MTD:T:4699 oocyte maturation factor Mos (Cmos) gene, partial cds.
22772390755 0.883Phrynops williamsi mitochondrial cytochrome c oxidase subunit I-like (COI) gene, partial sequence.
33357018333677 0.678Phrynops hogei 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
4137124417417 1.000Acanthochelys macrocephala isolate AK6593 cytochrome b (cytb) gene, partial cds; mitochondrial.
55567519650664 0.980Pelusios castanoides voucher REPT_D5946 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
66275118252447 0.899Platemys platycephala voucher MVZ247579 cytochrome oxidase subunit 1 gene, partial cds; mitochondrial.
77111876876 1.000Chelodina longicollis atrial natriuretic peptide (ANP) mRNA, complete cds.
88111249249 1.000Chelodina longicollis glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, partial cds.
99222315315 1.000Chelodina longicollis voucher MVZ230488 ornithine decarboxylase antizyme 1 (OAZ1) mRNA, partial cds.
1010222390480 0.906Chelodina longicollis voucher MVZ230488 ribosomal protein L7a (RPL7A) mRNA, partial cds.
1111111377377 1.000Chelodina longicollis voucher MVZ230488 ribosomal protein L11 (RPL11) mRNA, partial cds.
12125014418266447 0.854Phrynops geoffroanus voucher MTD:T:645 12S ribosomal RNA gene, partial sequence; mitochondrial.
131338300124381094 0.627Mesoclemmys gibba voucher MTD:T:100 cytochrome b (Cytb) gene, partial cds; and tRNA-Thr gene, partial sequence; mitochondrial.
141437125127001154 0.797Platemys platycephala voucher MVZ247579 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
1515111773773 1.000Chelodina longicollis B-type natriuretic peptide (BNP) mRNA, complete cds.
1616111162162 1.000Chelodina rugosa microsatellite T12 sequence.
1717111124124 1.000Chelodina rugosa microsatellite T14 sequence.
1818111125125 1.000Chelodina rugosa microsatellite T17 sequence.
1919111164164 1.000Chelodina rugosa microsatellite T26 sequence.
2020111162162 1.000Chelodina rugosa microsatellite T42 sequence.
2121111141141 1.000Chelodina rugosa microsatellite T44 sequence.
2222111148148 1.000Chelodina rugosa microsatellite T80 sequence.
2323111146146 1.000Chelodina rugosa microsatellite T87 sequence.
2424111165165 1.000Chelodina rugosa microsatellite T58 sequence.
2525111240240 1.000Chelodina rugosa microsatellite T11 sequence.
2626111369369 1.000Chelodina rugosa microsatellite T15 sequence.
2727111345345 1.000Chelodina rugosa microsatellite T31 sequence.
2828111262262 1.000Chelodina rugosa microsatellite T39 sequence.
2929111223223 1.000Chelodina rugosa microsatellite T41 sequence.
3030111242242 1.000Chelodina rugosa microsatellite T47 sequence.
3131111450450 1.000Chelodina rugosa microsatellite T67 sequence.
3232111138138 1.000Chelodina rugosa microsatellite T27 sequence.
3333111330330 1.000Chelodina rugosa clone T48 microsatellite sequence.
3434121376376 1.000Chelodina rugosa voucher UC:AA20211 control region, partial sequence; mitochondrial.
3535333577582 0.996Podocnemis expansa voucher HBS109191 anonymous locus TB29 genomic sequence.
3636333678700 0.979Emydura macquarii voucher HBS100714 anonymous locus TB81 genomic sequence.
3737333215215 1.000Chelodina novaeguineae u17 snoRNA gene.
383814733224466 0.713Elseya sp. albagula haplotype ESP11 control region, partial sequence; mitochondrial.
3939333338339 0.998Phrynops sp. JJF-2012 voucher MVZ247578 ribosomal protein S14 (RPS14) mRNA, partial cds.
4040111421421 1.000Platemys platycephala internal transcribed spacer 2, partial sequence.
414111144804480 1.000Acanthochelys spixii retrotransposon CR1-like LINE, copmlete sequence.
4242131290388 0.907Acanthochelys spixii CR1-like LINE DNA, partial sequence.
434311112121212 1.000Chelodina siebenrocki L-lactate dehydrogenase B (LDH-B) mRNA, complete cds.
4444111999999 1.000Chelodina siebenrocki L-lactate dehydrogenase A (LDH-A) mRNA, complete cds.
4545111475475 1.000Chelodina expansa clone TCE74 microsatellite sequence.
4646111305305 1.000Chelodina expansa clone TCE64 microsatellite sequence.
4747111447447 1.000Chelodina expansa clone TCE76.1 microsatellite sequence.
4848111508508 1.000Chelodina expansa clone TCE89.1 microsatellite sequence.
4949111322322 1.000Chelodina expansa clone TCE86 microsatellite sequence.
5050111363363 1.000Chelodina expansa clone TCE92.1-2 microsatellite sequence.
5151111318318 1.000Chelodina expansa clone TCE70 microsatellite sequence.
5252111422422 1.000Elseya albagula microsatellite Ealb02 sequence.
5353111466466 1.000Elseya albagula microsatellite Ealb05 sequence.
5454111282282 1.000Elseya albagula microsatellite Ealb06 sequence.
5555111325325 1.000Elseya albagula microsatellite Ealb07 sequence.
5656111486486 1.000Elseya albagula microsatellite Ealb09 sequence.
5757111375375 1.000Elseya albagula microsatellite Ealb10 sequence.
5858111497497 1.000Elseya albagula microsatellite Ealb14 sequence.
5959111399399 1.000Elseya albagula microsatellite Ealb15 sequence.
6060111370370 1.000Elseya albagula microsatellite Ealb17 sequence.
6161111273273 1.000Elseya albagula microsatellite Ealb18 sequence.
6262111112112 1.000Elseya albagula microsatellite Ealb19 sequence.
6363111232232 1.000Elseya albagula microsatellite Ealb20 sequence.
6464111293293 1.000Elseya albagula microsatellite Ealb24 sequence.
6565111377377 1.000Elseya albagula microsatellite Ealb25 sequence.
66662152247249 0.994Myuchelys novaeguineae voucher UC:AA042024 NADH dehydrogenase subunit 4 gene, partial cds; tRNA-His and tRNA-Ser genes, complete sequence; and tRNA-Leu gene, partial sequence; mitochondrial.
6767111335335 1.000Emydura macquarii krefftii microsatellite Ekref04 sequence.
6868111379379 1.000Emydura macquarii krefftii microsatellite Ekref06 sequence.
6969111424424 1.000Emydura macquarii krefftii microsatellite Ekref07 sequence.
7070111401401 1.000Emydura macquarii krefftii microsatellite Ekref08 sequence.
7171111421421 1.000Emydura macquarii krefftii microsatellite Ekref09 sequence.
7272111190190 1.000Emydura macquarii krefftii microsatellite Ekref10 sequence.
7373111243243 1.000Emydura macquarii krefftii microsatellite Ekref12 sequence.
7474111374374 1.000Emydura macquarii krefftii microsatellite Ekref13 sequence.
7575111455455 1.000Emydura macquarii krefftii microsatellite Ekref14 sequence.
7676111493493 1.000Emydura macquarii krefftii microsatellite Ekref15 sequence.
7777111194194 1.000Emydura macquarii krefftii microsatellite Ekref17 sequence.
7878111325325 1.000Emydura macquarii krefftii microsatellite Ekref18 sequence.
7979111188188 1.000Emydura macquarii krefftii microsatellite Ekref20 sequence.
8080111329329 1.000Emydura macquarii krefftii microsatellite Ekref21 sequence.
8181111432432 1.000Emydura macquarii krefftii microsatellite Ekref22 sequence.
8282111439439 1.000Emydura macquarii macquarii clone TLE10 microsatellite sequence.
8343716512533855 0.899Pelusios castanoides mitochondrial ND4 gene (partial), tRNA-His gene and tRNA-Leu gene (partial), specimen voucher MTD T 5497.
84831523105932793 0.605Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
8584111324324 1.000Pelusios sinuatus R35 gene intron, specimen voucher MTD T 5564.
8685111528528 1.000Hydromedusa tectifera mitochondrial control region, partial sequence.
87868156610718 0.960Hydromedusa tectifera brain-derived neurotrophic factor (BDNF) gene, partial cds.
888711126498580 0.987Podocnemis sextuberculata partial nt-3 gene for neurotrophin-3.
8988666373440 0.970Podocnemis expansa proopiomelanocortin (POMC) mRNA, partial sequence.
908911111201120 1.000Pelusios subniger alpha enolase mRNA, partial cds.
9190111909909 1.000Pelusios subniger dopamine receptor type 1b (dbdr) gene, partial cds.
9291111507507 1.000Pelusios subniger acetylcholinergic receptor M4 (acm4) gene, partial cds.
9392111751751 1.000Pelusios subniger dopamine receptor type 1a (dadr) gene, partial cds.
9493111523523 1.000Pelusios subniger transcription factor sox-9 (sox9) gene, partial cds.
9594111519519 1.000Pelusios subniger recombination-activating gene 1 (RAG1) gene, partial cds.
9695141491541 0.950Hydromedusa maximiliani mitochondrial control region, partial sequence.
9796131374391 0.979Hydromedusa maximiliani clone Hmaxmb1b cytochrome b-like gene, partial sequence; mitochondrial gene for mitochondrial product.
989711111491149 1.000Pelusios castaneus myf-5 gene for myogenic factor 5, partial cds.
9998241144190 0.830Pelusios niger mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 5160a.
1009934195164 0.704Pelusios adansonii mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 6074.
101100241132149 0.918Pelusios niger mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 5160c.
102101111255255 1.000Pelusios castaneus insulin-like growth factor 1 (IGF1) mRNA, partial cds.
103102111188188 1.000Mesoclemmys nasutus NADH dehydrogenase subunit 3 (ND3) gene, partial cds; mitochondrial.
104103111189189 1.000Macrochelodina parkeri NADH dehydrogenase subunit 3 (ND3) gene, partial cds; mitochondrial.
105104111136136 1.000Pelusios adansonii R35 gene intron, specimen voucher MTD T 6074.
1062061293110421329 0.890Podocnemis expansa isolate Y45 D-loop, partial sequence; mitochondrial.
107107111393393 1.000Podocnemis expansa voucher HBS109191 anonymous locus TB17 genomic sequence.
108207111330330 1.000Podocnemis expansa mitochondrial partial D-loop, isolate PEXP1.
10920812111141116 0.999Podocnemis expansa isolate Pexp-10 control region, partial sequence; mitochondrial.
110209111615615 1.000Podocnemis expansa voucher TNE 1255 SLC8A1 solute carrier family 8 member 1 (SLC8A1) gene, partial cds.
111210111597597 1.000Podocnemis expansa voucher TNE 1255 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.
112211111702702 1.000Podocnemis expansa voucher TNE 1255 35 G protein-coupled receptor 149 (R35) gene, partial cds.
113212222743882 0.921Podocnemis expansa voucher TNE 1255 zinc finger homeobox protein (ZEB2) gene, partial cds.
114213222560636 0.940Podocnemis expansa bone morphogenetic protein 2 (BMP2) gene, partial cds.
115214111622622 1.000Podocnemis expansa follistatin-like protein 5 (FSTL5) gene, partial cds.
116215111605605 1.000Podocnemis expansa zinc finger protein 36 C3H type-like 1 (ZFP36L1) gene, partial cds.
117216111531531 1.000Podocnemis expansa endothelin converting enzyme-like protein 1 (ECEL1) gene, partial cds.
118123222549722 0.880Podocnemis expansa nerve growth factor beta polypeptide (NGFB) gene, partial cds.
119217111912912 1.000Podocnemis expansa voucher TNE 1255 caspase recruitment domain family member 4 (CARD4) gene, partial cds.
120218111585585 1.000Podocnemis expansa voucher TNE 1255 holocarboxylase synthetase (HLCS) gene, partial cds.
1212192217591176 0.823Podocnemis unifilis cullin-associated and neddylation-dissociated 1 gene, partial cds.
122220111168168 1.000Podocnemis expansa microsatellite PE344 sequence.
123221111317317 1.000Podocnemis expansa microsatellite PE519 sequence.
124222111252252 1.000Podocnemis expansa microsatellite PE1075 sequence.
125223111165165 1.000Erymnochelys madagascariensis clone 59HDZ188 microsatellite sequence.
126224121212226 0.969Erymnochelys madagascariensis clone 59HDZ397 microsatellite sequence.
127225111220220 1.000Erymnochelys madagascariensis clone 59HDZ196 microsatellite sequence.
128226111237237 1.000Erymnochelys madagascariensis clone 59HDZ234 microsatellite sequence.
129227111106106 1.000Erymnochelys madagascariensis clone 59HDZ242 microsatellite sequence.
130228111311311 1.000Erymnochelys madagascariensis clone 59HDZ327 microsatellite sequence.
131229111201201 1.000Erymnochelys madagascariensis clone 59HDZ499 microsatellite sequence.
132230111229229 1.000Erymnochelys madagascariensis clone 59HDZ669 microsatellite sequence.
133231111154154 1.000Erymnochelys madagascariensis clone 59HDZ777 microsatellite sequence.
134232111152152 1.000Erymnochelys madagascariensis clone 59HDZ897 microsatellite sequence.
135273111429429 1.000Podocnemis unifilis HBAA mRNA for alphaA-globin, complete cds.
136274111444444 1.000Podocnemis unifilis HBB mRNA for beta-globin, complete cds.
137275111164164 1.000Podocnemis unifilis clone Puni_1A5 microsatellite sequence.
138276111348348 1.000Podocnemis unifilis clone Puni_1B2 microsatellite sequence.
139277111260260 1.000Podocnemis unifilis clone Puni_1B11 microsatellite sequence.
140278111165165 1.000Podocnemis unifilis clone Puni_1C3 microsatellite sequence.
141279111136136 1.000Podocnemis unifilis clone Puni_1C9 microsatellite sequence.
142280111218218 1.000Podocnemis unifilis clone Puni_1B10 microsatellite sequence.
143281111129129 1.000Podocnemis unifilis clone Puni_1D9 microsatellite sequence.
144282111163163 1.000Podocnemis unifilis clone Puni_1D11 microsatellite sequence.
145283111166166 1.000Podocnemis unifilis clone Puni_1D12 microsatellite sequence.
146284111203203 1.000Podocnemis unifilis clone Puni_1E1 microsatellite sequence.
147285111189189 1.000Podocnemis unifilis clone Puni_1F10 microsatellite sequence.
148286111381381 1.000Podocnemis unifilis clone Puni_1H8 microsatellite sequence.
149287111171171 1.000Podocnemis unifilis clone Puni_1H9 microsatellite sequence.
150288111151151 1.000Podocnemis unifilis clone Puni_2A9 microsatellite sequence.
151289111250250 1.000Podocnemis unifilis clone Puni_2C11 microsatellite sequence.
152290111219219 1.000Podocnemis unifilis clone Puni_2D9 microsatellite sequence.
153291111157157 1.000Podocnemis unifilis clone Puni_2D10 microsatellite sequence.
154292111240240 1.000Podocnemis unifilis clone Puni_2E7 microsatellite sequence.
155293111283283 1.000Podocnemis unifilis clone Puni_2F6 microsatellite sequence.
1562944171324520 0.913Podocnemis unifilis isolate PounA3 mitochondrial control region, partial sequence.
157295111102102 1.000Podocnemis unifilis homeobox protein A3 gene, partial cds.
1582961115757 1.000Podocnemis unifilis homeobox protein D3 gene, partial cds.
1592971115757 1.000Podocnemis unifilis homeobox protein B3 gene, partial cds.
1602982421497691 0.909Podocnemis lewyana haplotype E D-loop, partial sequence; mitochondrial.
161299111702702 1.000Podocnemis unifilis butyrylcholinesterase gene, partial cds.
162300111552552 1.000Podocnemis unifilis bromodomain PHD finger transcription factor gene, partial cds.
163301111597597 1.000Podocnemis unifilis chondroadherin gene, partial cds.
164302111813813 1.000Podocnemis unifilis dolichol kinase gene, partial cds.
165303111762762 1.000Podocnemis unifilis FAT tumor suppressor-like protein 4 gene, partial cds.
166304111531531 1.000Podocnemis unifilis FIC domain-containing protein gene, partial cds.
167305111783783 1.000Podocnemis unifilis glucuronic acid epimerase gene, partial cds.
168306111522522 1.000Podocnemis unifilis G protein-coupled estrogen receptor 1 gene, partial cds.
169307111936936 1.000Podocnemis unifilis hypothetical protein gene, partial cds.
1703081219661737 0.778Podocnemis unifilis KIAA1239 gene, partial cds.
17130911110561056 1.000Podocnemis unifilis ATP-dependent DNA ligase IV gene, partial cds.
172310111840840 1.000Podocnemis unifilis leucine-rich repeat neuronal protein 1 gene, partial cds.
173311111978978 1.000Podocnemis unifilis microtubule-actin crosslinking factor 1 gene, partial cds.
174312111342342 1.000Podocnemis unifilis pannexin 2 gene, partial cds.
17531311112181218 1.000Podocnemis unifilis pyruvate dehyrogenase phosphatase catalytic subunit 1 gene, partial cds.
176314111993993 1.000Podocnemis unifilis phospholipase C-like protein 2 gene, partial cds.
17731511113711371 1.000Podocnemis unifilis periplakin gene, partial cds.
178316111462462 1.000Podocnemis unifilis arginine-glutamic acid dipeptide repeat-containing protein gene, partial cds.
17931711111521152 1.000Podocnemis unifilis spastic ataxia of Charlevoix-Saguenay gene, partial cds.
1803181218941698 0.763Podocnemis unifilis titin (TTN) gene, partial cds.
18131922220602454 0.920Podocnemis unifilis 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
18232011122082208 1.000Podocnemis unifilis sacsin (SACS) gene, partial cds.
183325111323323 1.000Podocnemis vogli mitochondrial partial D-loop.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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