Cluster set at subtree whose root is Chondrichthyes (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-7273371612 0.736Taeniura lymma 5S ribosomal RNA gene and non-transcribed spacer, partial sequence.
1-10766118120 1.000Rhizoprionodon porosus clone RP8442 5S ribosomal RNA gene, complete sequence.
2-1783186513532648 0.721Etmopterus pusillus isolate s29 tRNA-Phe gene, partial sequence; 12S ribosomal RNA and tRNA-Val genes, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
3-14735658199718 0.751Raja radula isolate RrMS2 16S ribosomal RNA gene, partial sequence.
4-17953283642 0.659Raja miraletus voucher DBAE-1M05C26 D-loop, partial sequence; mitochondrial.
5-13505718782 0.932Raja montagui isolate RJM34 D-loop, partial sequence; mitochondrial.
6-58553291382281559 0.413Carcharhinus altimus cytochrome oxidase subunit I gene, complete cds; mitochondrial.
7-808159390582 0.992Raja eglanteria sec1 family domain-containing 2 (SCFD2) gene, partial cds.
8-6297343261013 0.898Platyrhina sinensis recombination activating protein 1 (RAG-1) gene, partial cds.
9-6168801565661059 0.921Rhinoptera steindachneri haplotype Rs1 NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; and tRNA-Trp gene, partial sequence; mitochondrial.
15-161684742281149 0.531Gymnura japonica mitochondrial gene for cytochrome b, complete cds.
16-666230384 0.916Chlamydoselachus anguineus 28S rRNA, 5' end (C1, D1, and C2 domains).
17-444134158 0.949Raja radiata 28S ribosomal RNA (D2 domain).
18-5556873 0.973Chlamydoselachus anguineus 28S ribosomal RNA (D8 domain).
20-9039645543873 0.896Carcharhinus tilstoni haplotype CT07 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; tRNA-His and tRNA-Ser genes, complete sequence; and tRNA-Leu gene, partial sequence; mitochondrial.
101-21776461560 0.914Dipturus nidarosiensis voucher DBAE-M06C10 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
102-624313531806 0.788R.erinacea Ig rearranged mu-chain mRNA V-D-J-C region.
106-120155776813446 0.483Carcharhinus leucas RAG1 mRNA, complete cds.
107-525438726983 0.942Rhina ancylostoma 12S ribosomal RNA gene, complete sequence; mitochondrial gene for mitochondrial product.
112-666750956 0.820Leucoraja erinacea glucocorticoid receptor mRNA, partial cds.
121-4438441160 0.892Leucoraja erinacea patched 2 (Ptc2) mRNA, partial cds.
122-555245613 0.643Hydrolagus colliei Sonic hedgehog (Shh) gene, appendage-specific regulatory element, partial genomic sequence.
137-52158821758 0.823Leucoraja erinacea beta actin (ACTB) mRNA, complete cds.
165-6658471621 0.692Raja erinacea rod opsin (RAERRHO) mRNA, complete cds.
176-444546547 1.000Hydrolagus colliei glutamate decarboxylase 67kDa isoform GAD67 mRNA, partial cds.
186-81267795179 0.447Dasyatis sabina renal urea transporter strUT-2c mRNA, complete cds, alternatively spliced.
189-26282510191788 0.966Rhinobatos lentiginosus 18S ribosomal RNA (18S rRNA), 5' end.
190-26262634694550 0.859Hexanchus griseus 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
212-666808919 0.944Triakis scyllium mRNA for C-type natriuretic peptide precursor, complete cds.
237-5175404849 0.878Carcharhinus leucas ribosomal protein L8 (RPL8) mRNA, partial cds.
241-323823280641 0.708Rhynchobatus djiddensis isolate CIFE-FGB24 12S ribosomal RNA gene, partial sequence; mitochondrial.
247-5493226446 0.822Paratrygon aiereba clone Pa32 5S ribosomal RNA gene region.
261-48410061217 0.887Cephaloscyllium umbratile mRNA for fructose-bisphosphate aldolase A, partial cds.
265-44311711736 0.817Callorhinchus callorynchus PGK mRNA for phosphoglycerate kinase, partial cds.
266-444631764 0.886Potamotrygon motoro TPI mRNA for triose phosphate isomerase, partial cds.
291-47211881188 1.000Mobula tarapacana haplotype MobTar02 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
338-4122331352 0.970Pristis microdon haplotype 2 control region, partial sequence; mitochondrial.
369-44313862045 0.811Ray (T.californica) acetylcholine receptor alpha subunit mRNA, complete cds.
371-44315692236 0.776Ray acetylcholine receptor delta-subunit mRNA.
473-6274396694 0.901Alopias pelagicus isolate 672 cytochrome c oxidase subunit I gene, partial cds; mitochondrial.
476-51284495969 0.822Somniosus pacificus isolate MS-3 control region, partial sequence; mitochondrial.
480-203012558690 0.907Alopias vulpinus cytochrome oxidase subunit II gene, partial cds; mitochondrial.
513-38478123731193 0.706Galeorhinus galeus isolate ARGGG3 tRNA-Pro gene, partial sequence; D-loop, complete sequence; and tRNA-Phe gene, partial sequence; mitochondrial.
514-7938951445 0.879Carcharhinus brevipinna 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
533-14148783783 1.000Alopias vulpinus cytochrome oxidase subunit III gene, partial cds; mitochondrial.
541-414414302725 0.821Carcharhinus plumbeus IgW heavy chain mRNA, complete cds.
549-452502546 0.957Carcharhinus leucas internal transcribed spacer 2, partial sequence.
569-443622634 0.990Carcharhinus falciformis recombination activating protein 1 (RAG-1) gene, partial cds.
668-481142171 0.972Sphyrna lewini haplotype 3 LDHA6 gene, intron 6.
684-993607645 0.965Eusphyra blochii distal-less 1 (dlx1) gene, intron 2.
685-993736978 0.936Sphyrna corona distal-less 2 (dlx2) gene, partial cds.
686-9242777825 0.969Sphyrna lewini 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
815-510114311531 0.979Rhizoprionodon porosus isolate OC5 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
908-6131523523 1.000Mustelus stevensi isolate 3 tRNA-Gln gene, partial sequence; tRNA-Met gene, complete sequence; and NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial.
909-6111507564 0.928Mustelus griseus D-loop, partial sequence; and tRNA-Pro and tRNA-Thr genes, complete sequence; mitochondrial.
931-456411571850 0.919Triakis scyllium IgM mRNA for immunoglobulin M heavy chain, complete cds, clone: 2.
932-413418842420 0.856Orectolobus maculatus clone 18H-2 immunoglobulin new antigen receptor mRNA, partial cds.
976-101010575744 0.877Carcharodon carcharias microsatellite Ccar6.
977-1060813321386 0.999Lamna ditropis isolate Ladi6 Hsp70 protein (Hsp70) gene, partial cds.
978-123910291513 0.773Carcharias taurus isolate Cata7 Hsp70 protein (Hsp70) gene, partial cds.
979-474427532 0.919Mitsukurina owstoni 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence.
980-527945181106 0.811Carcharodon carcharias isolate 81906020 control region, partial sequence; mitochondrial.
981-45311541280 0.974Carcharodon carcharias 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1149-12164572573 1.000Orectolobus halei isolate 5 control region, partial sequence; mitochondrial.
1150-13195824833 0.991Stegostoma fasciatum voucher MOZ ATPase subunit 8 and ATPase subunit 6 genes, partial cds; mitochondrial.
1151-12124136147 0.959Orectolobus parvimaculatus ribosomal protein S7 gene, intron 2.
1221-45210411041 1.000Hydrolagus colliei bio-material GN1179 NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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