Cluster set at subtree whose root is Petromyzontiformes (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0022214012319 0.802Lampetra planeri dystrophin mRNA, partial cds.
1122211031138 0.985Lampetra planeri large subunit ribosomal RNA gene, partial sequence.
2217504351720 0.588Ichthyomyzon greeleyi voucher G10 NADH dehydrogenase subunit 3 (ND3) gene, complete cds; tRNA-Arg gene, complete sequence; and NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
334728295542102 0.688Lampetra sp. CSM-2009 mitochondrial cytb gene (partial), ATP8 gene and ATP6 gene (partial), haplotype 38.
4499044741095 0.843Lethenteron reissneri mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, southern form.
556243463575 0.945Lampetra planeri isolate 3hlpsad2 16S ribosomal RNA gene, partial sequence; mitochondrial.
661460254701119 0.549Ichthyomyzon fossor voucher F02 NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and D-loop, complete sequence; mitochondrial.
774562758872 0.879Ichthyomyzon unicuspis voucher U02 ATPase subunit 8 (ATPase8) and ATPase subunit 6 (ATPase6) genes, complete cds; mitochondrial.
8831183402714 0.712Lampetra planeri clone DD#03 Vlr protein (vlr) mRNA, partial cds.
9932403411660 0.776Lampetra planeri clone CMS48 Vlr protein (vlr) mRNA, partial cds.
101052348781727 0.894Lampetra appendix clone LaVLR.35 variable lymphocyte receptor mRNA, complete cds.
1111121397580 0.842Lampetra planeri dystrobrevin long isoform mRNA, partial cds, alternatively spliced.
1212302319507673 0.958Lampetra ayresii voucher WTU:UW118537 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
1313232435820 0.689Lampetra planeri clone foxcb forkhead box protein mRNA, partial cds.
1414232330413 0.876Lampetra planeri clone foxfa forkhead box protein mRNA, partial cds.
1515111156156 1.000Lampetra planeri clone foxl1 forkhead box protein mRNA, partial cds.
1616111312312 1.000Lampetra planeri clone foxq1.2 forkhead box protein mRNA, partial cds.
1717111446446 1.000Lampetra planeri clone foxq1.1 forkhead box protein mRNA, partial cds.
1818131433503 0.908Lampetra planeri clone 45 variable lymphocyte receptor C (VLRC) gene, partial cds.
1919111240240 1.000Lampetra planeri clone 36 variable lymphocyte receptor C (VLRC) gene, partial cds.
2020111251251 1.000Lampetra planeri clone 13 variable lymphocyte receptor C (VLRC) gene, partial cds.
2121121342415 0.912Lampetra planeri clone 44 variable lymphocyte receptor C (VLRC) gene, partial cds.
22222726631406 0.697Lampetra planeri clone VLRC-6_N23_5/3 variable lymphocyte receptor C (VLRC) gene, complete cds.
2323111181181 1.000L.planeri partial engrailed related homeobox gene (En).
24242227171 1.000L.planeri mitochondrial tRNA-Glu gene.
252527618270429 0.885Lampetra sp. 'Adige Basin' cytochrome b (cytb) gene, partial cds; mitochondrial.
2626111269269 1.000Lampetra planeri partial whn gene for whn transription factor, exon A.
2727111244244 1.000Lampetra planeri partial whn gene for whn transcription factor, exon B.
2828111333333 1.000Lampetra planeri partial whn gene for whn transcription factor, exon C.
29292728282 1.000Lampetra planeri homeobox protein LpHox1B gene, partial cds.
30302228282 1.000Lampetra planeri homeobox protein LpHox2A gene, partial cds.
31312228282 1.000Lampetra planeri homeobox protein LpHox3A gene, partial cds.
32322928282 1.000Lampetra planeri homeobox protein LpHox4-7D gene, partial cds.
33332528282 1.000Lampetra planeri homeobox protein LpHox8B gene, partial cds.
34342728282 1.000Lampetra planeri homeobox protein LpHox9C gene, partial cds.
35352328282 1.000Lampetra planeri homeobox protein LpHox1 gene, partial cds.
36361118282 1.000Lampetra planeri homeobox protein LpHox1 gene, partial cds.
3737232562600 0.974Lampetra planeri partial mRNA for paired superclass homeobox transcription factor (pitxa gene).
3838111283283 1.000Lampetra aepyptera haplotype OUVC11027 control region, partial sequence; mitochondrial.
393947417381785 0.990Lampetra aepyptera 18S ribosomal RNA (18S rRNA), 5' end.
4040111631631 1.000Lethenteron reissneri mRNA for triose phosphate isomerase, partial cds.
4141111980980 1.000Lethenteron reissneri mRNA for calreticulin, partial cds.
424212112831297 0.995Lethenteron reissneri mRNA for enolase-2, partial cds.
434311117851785 1.000Lethenteron reissneri mRNA for RNA polymerase II largest subunit, partial cds.
444411116141614 1.000Lethenteron reissneri mRNA for RNA polymerase III largest subunit, partial cds.
454511113291329 1.000Lampetra reissneri mRNA for FGFR3/4, partial cds.
46462319601153 0.935Lampetra reissneri mRNA for EphB, partial cds.
4747111799799 1.000Lampetra reissneri mRNA for src-like A, partial cds.
484811110231023 1.000Lampetra reissneri mRNA for src-like B, partial cds.
4949111966966 1.000Lampetra reissneri mRNA for kit-like A, partial cds.
505011110441044 1.000Lampetra reissneri mRNA for kit-like B, partial cds.
515122222713536 0.821Lampetra reissneri TBP mRNA for TATA-box binding protein, partial cds.
5252111775775 1.000Lampetra reissneri LrKIF1A mRNA for KIF1-like protein A, partial cds.
5353111793793 1.000Lampetra reissneri LrKIF1B mRNA for KIF1-like protein B, partial cds.
5454111272272 1.000Lethenteron reissneri DNA, SINE sequence, clone: 1.
5555111153153 1.000Lethenteron reissneri DNA, SINE sequence, clone: 2.
5656111264264 1.000Lethenteron reissneri DNA, SINE sequence, clone: 3.
5757111286286 1.000Lethenteron reissneri DNA, SINE sequence, clone: 4.
5858111222222 1.000Lethenteron reissneri DNA, SINE sequence, clone: 6.
595911115941594 1.000Lethenteron reissneri G6PD mRNA for glucose-6-phosphate 1-dehydrogenase, partial cds.
606011111761176 1.000Lethenteron reissneri PGK mRNA for phosphoglycerate kinase, partial cds.
61613391277611 0.583Lethenteron reissneri mitochondrial genes for tRNA-Thr, tRNA-Glu and polymorphic region, isolate: Ss3.
626211129752975 1.000Lethenteron reissneri CNDP2 mRNA for cytosolic nonspecific dipeptidase, complete cds.
636311123392339 1.000Lethenteron reissneri sec-M20A mRNA for secretory M20A dipeptidase, complete cds.
6464241120121 0.994Lampetra reissneri 5S rRNA.
656511113881388 1.000Mordacia mordax POC gene for proopiocortin, partial cds.
6666111538538 1.000Mordacia mordax pom gene for proopiomelanotropin, partial cds.
67671319181539 0.797Mordacia mordax MmoRAR2 mRNA for retinoic acid receptor 2, partial cds.
6868111480480 1.000Mordacia mordax MmoCOP mRNA for coatomer protein complex, subunit epsilon, partial cds.
6969232104104 1.000Mordacia mordax MmoHh2 mRNA for hedgehog homolog, partial cds.
707022214721751 0.920Mordacia mordax MmoEF1a mRNA for elongation factor 1 alpha, partial cds.
7171111360360 1.000Mordacia mordax MmoRPL7 mRNA for ribosomal protein L7, partial cds.
7272111360360 1.000Mordacia mordax MmoRPL10 mRNA for ribosomal protein L10, partial cds.
7373111414414 1.000Mordacia mordax MmoHsp90-1 mRNA for heat shock protein 90 homolog 1, partial cds.
7474111928928 1.000Mordacia mordax MmoDlxA mRNA for homeobox-containing Dlx homolog, partial cds.
7575111781781 1.000Mordacia mordax MmoHox10s mRNA for Hox10 homolog, partial cds.
76761119393 1.000Mordacia mordax MmoHox9-1 mRNA for Hox9 homolog, partial cds.
7777111232232 1.000Mordacia mordax MmoRPS9 mRNA for ribosomal protein S9, partial cds.
7878111949949 1.000Mordacia mordax MmoHox11-1 mRNA for Hox11 homolog, partial cds.
797911114711471 1.000Mordacia mordax mitochondrial COIII, ND3, ND4L, ND4 genes for cytochrome oxidase III, NADH dehydrogenase subunit 3, NADH dehydrogenase subunit 4L, NADH dehydrogenase subunit 4, partial and complete cds.
8080222370371 0.999Geotria australis 12S ribosomal RNA gene, partial sequence; mitochondrial.
8181111666666 1.000Mordacia mordax preprogonadotropin-releasing hormone III mRNA, complete cds.
82825141966966 1.000Ichthyomyzon unicuspis voucher U04 NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
838352925862647 0.521Entosphenus tridentatus voucher McKen22 NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp and tRNA-Ala genes, complete sequence; and tRNA-Asn gene, partial sequence; mitochondrial.
84845121761763 0.998Ichthyomyzon greeleyi voucher G12 tRNA-Asp gene, complete sequence; and cytochrome oxidase subunit 2 (COII) gene, complete cds; mitochondrial.
8585361786786 1.000Ichthyomyzon castaneus voucher C31 cytochrome oxidase subunit 3 (COIII) gene, complete cds; mitochondrial.
868652016351029 0.854Ichthyomyzon unicuspis voucher U02 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial.
878762725561015 0.910Entosphenus tridentatus voucher 94-3 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; tRNA-His, tRNA-Ser, and tRNA-Leu genes, complete sequence; and NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
88882516911056 0.930Ichthyomyzon fossor voucher F03 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
898926111031103 1.000Ichthyomyzon fossor voucher F04 cytochrome b (cytb) pseudogene, partial sequence; and tRNA-Pro, tRNA-Phe, and 12S ribosomal RNA pseudogenes, complete sequence, nuclear copies of mitochondrial genes.
9090111504504 1.000Ichthyomyzon unicuspis microsatellite Iun8 sequence.
9191111371371 1.000Ichthyomyzon unicuspis microsatellite Iun1 sequence.
9292111524524 1.000Ichthyomyzon unicuspis microsatellite Iun2 sequence.
9393111428428 1.000Ichthyomyzon unicuspis microsatellite Iun3 sequence.
9494111691691 1.000Ichthyomyzon unicuspis microsatellite Iun4 sequence.
9595111632632 1.000Ichthyomyzon unicuspis microsatellite Iun5 sequence.
9696111648648 1.000Ichthyomyzon unicuspis microsatellite Iun6 sequence.
9797111485485 1.000Ichthyomyzon unicuspis microsatellite Iun7 sequence.
9898111460460 1.000Ichthyomyzon unicuspis microsatellite Iun9 sequence.
9999111488488 1.000Ichthyomyzon unicuspis microsatellite Iun10 sequence.
100100111373373 1.000Ichthyomyzon unicuspis microsatellite Iun11 sequence.
101101111672672 1.000Ichthyomyzon unicuspis microsatellite Iun12 sequence.
102102111547547 1.000Ichthyomyzon unicuspis microsatellite Iun13 sequence.
103103111489489 1.000Ichthyomyzon unicuspis microsatellite Iun14 sequence.
10410411159765976 1.000Lamprey vitellogenin mRNA, complete cds.
105105111547547 1.000Ichthyomyzon unicuspis glutamate decarboxylase GAD mRNA, partial cds.
106106663710732 0.987Lampetra tridentatus preprogonadotropin-releasing hormone III mRNA, complete cds.
107107111659659 1.000L.zanandreai glb mRNA.
108108352677711 0.975L.zanandreai glb mRNA.
10910911110561056 1.000Geotria australis CNP mRNA for C-type natriuretic peptide, complete cds.
110110111669669 1.000Geotria australis POC mRNA for proopiocortin, partial cds.
111111111739739 1.000Geotria australis POM gene for proopiomelanotropin, partial cds.
11211211114821482 1.000Geotria australis mitochondrial COIII, ND3, ND4L, ND4 genes for cytochrome oxidase III, NADH dehydrogenase subunit 3, NADH dehydrogenase subunit 4L, NADH dehydrogenase subunit 4, partial and complete cds.
113113111774774 1.000Geotria australis preprogonadotropin-releasing hormone III mRNA, complete cds.
11411433310951666 0.826Geotria australis red-sensitive retinal pigment mRNA, complete cds.
11511511110861086 1.000Geotria australis blue-sensitive retinal pigment mRNA, complete cds.
11611623210621145 0.953Geotria australis retinal rod pigment RhB mRNA, complete cds.
11711711110381038 1.000Geotria australis UV-sensitive retinal pigment mRNA, complete cds.
118118111170170 1.000Geotria australis 5.8S ribosomal RNA gene and internal transcribed spacer 2, partial sequence.
11911911114651465 1.000Geotria australis 28S ribosomal RNA gene, partial sequence.
12012011115201520 1.000Geotria australis 28S ribosomal RNA gene, partial sequence.
12112122210191325 0.884Lampetra appendix transthyretin (TTR) mRNA, complete cds.
122122111711711 1.000Lampetra richardsoni microsatellite marker Lri-1 sequence.
123123111470470 1.000Lampetra richardsoni microsatellite marker Lri-2 sequence.
124124111655655 1.000Lampetra richardsoni microsatellite marker Lri-3 sequence.
125125111579579 1.000Lampetra richardsoni microsatellite marker Lri-4 sequence.
126126111534534 1.000Lampetra richardsoni microsatellite marker Lri-5 sequence.
127127121497617 0.903Lampetra richardsoni microsatellite marker Lri-6 sequence.
128128111736736 1.000Lampetra richardsoni microsatellite marker Lri-7 sequence.
129129111561561 1.000Lampetra richardsoni microsatellite marker Lri-8 sequence.
130130111778778 1.000Lampetra richardsoni microsatellite marker Lri-10 sequence.
131131111299299 1.000Entosphenus tridentatus voucher 3399-24 NADH dehydrogenase subunit 2 (ND2) gene, partial cds; tRNA-Trp gene, complete sequence; and tRNA-Ala gene, partial sequence; mitochondrial.
132132111495495 1.000Entosphenus tridentatus microsatellite marker Etr-1 sequence.
133133111472472 1.000Entosphenus tridentatus microsatellite marker Etr-2 sequence.
134134111571571 1.000Entosphenus tridentatus microsatellite marker Etr-3 sequence.
135135111344344 1.000Entosphenus tridentatus microsatellite marker Etr-4 sequence.
136136111697697 1.000Entosphenus tridentatus microsatellite marker Etr-5 sequence.
137137111512512 1.000Entosphenus tridentatus microsatellite marker Etr-6 sequence.
138138111497497 1.000Entosphenus tridentatus Ty3-gypsy group retrotransposon partial RT gene.
139139333437675 0.858Ichthyomyzon gagei neuropeptide Y (NPY) mRNA, complete cds.
140140222556568 0.989Ichthyomyzon gagei peptide methionine tyrosine (PMY) mRNA, complete cds.
141141333722929 0.876Ichthyomyzon gagei peptide YY (PYY) mRNA, complete cds.
142143251398400 0.999Lethenteron kessleri SoxD gene for transcription factor SoxD, intron region, partial sequence, isolate: k2.
143142111704704 1.000Lampetra sp. KM-1999 Ty3-gypsy group retrotransposon partial RT gene.
144144111471471 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 002-2.
145145111347347 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 005.
146146151439519 0.920Lethenteron sp. N DNA, microsatellite loci Lspn 010-2.
147147111579579 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 013.
148148111152152 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 019c.
149149111769769 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 021b.
150150111679679 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 024-2.
151151111659659 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 036-2.
152152111833833 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 050.
153153111210210 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 051.
154154111552552 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 059.
155155111684684 1.000Lethenteron sp. N DNA, microsatellite loci Lspn 094.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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