Cluster set at subtree whose root is Catopuma (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00221374375 0.999Catopuma badia 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
1118221318318 1.000Catopuma temminckii NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
217221640640 1.000Catopuma temminckii APP gene, partial sequence.
360221816817 0.999Catopuma temminckii CALB gene, partial sequence.
418221326326 1.000Catopuma badia CHRNA1 gene, partial sequence.
51922113681369 1.000Catopuma badia CLU gene, partial sequence.
620221518518 1.000Catopuma temminckii CMA1 (CMA1) gene, partial cds.
721221711715 0.997Catopuma badia DGKG2 gene, partial sequence.
822221412412 1.000Catopuma badia FES gene, partial sequence.
923221441441 1.000Catopuma badia GATA3 gene, partial sequence.
1025221622622 1.000Catopuma temminckii GNAZ (GNAZ) gene, partial cds.
1126221349349 1.000Catopuma temminckii HK1 gene, partial sequence.
1227221296296 1.000Catopuma temminckii NCL (NCL) gene, partial cds.
1328221290290 1.000Catopuma temminckii PNOC (PNOC) gene, partial cds.
1429221473473 1.000Catopuma temminckii RAG2 (RAG2) gene, partial cds.
1530221551551 1.000Catopuma temminckii RSA2 gene, partial sequence.
1631221371371 1.000Catopuma temminckii SIL gene, partial sequence.
1732221588589 0.999Catopuma temminckii TCP1 (TCP1) gene, partial cds.
181231785885 0.962Catopuma temminckii TTR gene, partial sequence.
1933221505507 0.998Catopuma temminckii ALAS gene, partial sequence.
2034221670670 1.000Catopuma temminckii ATP-7A (ATP7A) gene, partial cds.
2135221318318 1.000Catopuma temminckii IL2RG (IL2RG) gene, partial cds.
2236221900900 1.000Catopuma temminckii PLP gene, partial sequence.
2337221823844 0.988Catopuma temminckii isolate Pte18 ZFX gene, intron.
24412111641181 0.993Catopuma temminckii strain pteX zinc finger protein Zfx (Zfx) gene, partial cds.
2589111187187 1.000Catopuma temminckii MHC class I antigen (FLA-Z) gene, FLA-Z*1 allele, exon 2 and partial cds.
2690111218218 1.000Catopuma temminckii MHC class I antigen (FLA-Z) gene, FLA-Z*1 allele, exon 3 and partial cds.
2713111845845 1.000Catopuma temminckii Smcy gene, intron 4, complete sequence.
2814111941941 1.000Catopuma temminckii Ube1y gene, exon 18 and partial cds.
2915111726726 1.000Catopuma temminckii Zfy gene, intron.
301011112431243 1.000Catopuma temminckii interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
3157111892892 1.000Catopuma temminckii beta fibrinogen gene, intron 7.
32911110381038 1.000Catopuma temminckii NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial.
335811113681368 1.000Catopuma temminckii NADH dehydrogenase subunit 4 (NADH4) gene, partial cds; mitochondrial.
348131355409 0.951Catopuma temminckii isolate Beo cytochrome b gene, partial cds; mitochondrial.
3556111371371 1.000Catopuma temminckii 12S ribosomal RNA gene, partial sequence; mitochondrial.
3624111670670 1.000Catopuma temminckii GHR (GHR) gene, partial cds.
373811127272727 1.000Catopuma temminckii sex-determining region Y protein (SRY) gene, complete cds.
38111111403403 1.000Catopuma temminckii UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
39112111850850 1.000Catopuma temminckii UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
4042111188188 1.000Catopuma temminckii microsatellite PTE sequence.
4143131237237 1.000Catopuma temminckii MHC class II antigen (Pate-DRB) gene, Pate-DRB*501 allele, exon 2 and partial cds.
421111111401140 1.000Catopuma temminckii cytochrome b (cytb) gene, complete cds; mitochondrial.
4313211115451545 1.000Catopuma temminckii isolate AGCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
44133111684684 1.000Catopuma temminckii isolate AGCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
458311165876587 1.000Catopuma temminckii clone PTE1 carboxylesterase 7-like gene, complete sequence.
461861191323371 0.990Catopuma temminckii isolate BH_019 cytochrome b (Cytb) gene, partial cds; mitochondrial.
47123121783783 1.000Catopuma temminckii isolate CT5 prion protein (PRNP) gene, complete cds.
48187121608608 1.000Catopuma temminckii agouti signaling protein (ASIP) gene, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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