Cluster set at subtree whose root is Neofelis (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
08121374378 0.995Neofelis nebulosa voucher Nne80 16S ribosomal RNA gene, partial sequence; mitochondrial.
19111318318 1.000Neofelis nebulosa NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
21212111781181 0.999Neofelis nebulosa strain nnex zinc finger protein Zfx (Zfx) gene, partial cds.
3113231215402 0.696Neofelis nebulosa mitochondrial partial cytb gene for cytochrome b.
415111887887 1.000Neofelis nebulosa Hox8 early enhancer sequence.
519221785840 0.967Neofelis nebulosa Smcy gene, intron 4, complete sequence.
611121421421 1.000Neofelis nebulosa isolate 21 mitochondrial cytochrome b (cytb) gene, partial sequence.
7109111220220 1.000Neofelis nebulosa voucher Nne80 NADH dehydrogenase subunit 5 (NADH5) gene, partial cds; mitochondrial.
886111382382 1.000Neofelis nebulosa voucher Nne80 12S ribosomal RNA gene, partial sequence; mitochondrial.
9593201134187 0.798Neofelis nebulosa voucher Nne80 ATPase 8 (ATP8) gene, partial cds; mitochondrial.
1017111958958 1.000Neofelis nebulosa Ube1y gene, exon 18 and partial cds.
1118111726726 1.000Neofelis nebulosa Zfy gene, intron.
12022112541274 0.992Neofelis nebulosa interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
1310231779885 0.943Neofelis nebulosa TTR gene, partial sequence.
1420221654678 0.982Neofelis nebulosa nebulosa isolate 4_NNE beta fibrinogen (FGB) gene, intron 4.
151411110381038 1.000Neofelis nebulosa NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial.
162111113681368 1.000Neofelis nebulosa NADH dehydrogenase subunit 4 (NADH4) gene, partial cds; mitochondrial.
1733111642642 1.000Neofelis nebulosa APP gene, partial sequence.
1834111815815 1.000Neofelis nebulosa CALB gene, partial sequence.
1927111326326 1.000Neofelis nebulosa CHRNA1 gene, partial sequence.
203511113681368 1.000Neofelis nebulosa CLU gene, partial sequence.
2136111518518 1.000Neofelis nebulosa CMA1 (CMA1) gene, partial cds.
2237111705705 1.000Neofelis nebulosa DGKG2 gene, partial sequence.
2338111412412 1.000Neofelis nebulosa FES gene, partial sequence.
2439111441441 1.000Neofelis nebulosa GATA3 gene, partial sequence.
2540111670670 1.000Neofelis nebulosa GHR (GHR) gene, partial cds.
2641111622622 1.000Neofelis nebulosa GNAZ (GNAZ) gene, partial cds.
2742111674674 1.000Neofelis nebulosa GNB1 gene, partial sequence.
2843111349349 1.000Neofelis nebulosa HK1 gene, partial sequence.
2944111296296 1.000Neofelis nebulosa NCL (NCL) gene, partial cds.
3045111290290 1.000Neofelis nebulosa PNOC (PNOC) gene, partial cds.
3146111473473 1.000Neofelis nebulosa RAG2 (RAG2) gene, partial cds.
3247111551551 1.000Neofelis nebulosa RSA2 gene, partial sequence.
3348111371371 1.000Neofelis nebulosa SIL gene, partial sequence.
3449111590590 1.000Neofelis nebulosa TCP1 (TCP1) gene, partial cds.
3550111513513 1.000Neofelis nebulosa ALAS gene, partial sequence.
3651111670670 1.000Neofelis nebulosa ATP-7A (ATP7A) gene, partial cds.
3752111318318 1.000Neofelis nebulosa IL2RG (IL2RG) gene, partial cds.
3853111899899 1.000Neofelis nebulosa PLP gene, partial sequence.
3954111845845 1.000Neofelis nebulosa isolate Nne27 ZFX gene, intron.
405511127262726 1.000Neofelis nebulosa sex-determining region Y protein (SRY) gene, complete cds.
4172161237237 1.000Neofelis nebulosa MHC class II antigen (Nene-DRB) gene, Nene-DRB*3 allele, exon 2 and partial cds.
42110111411411 1.000Neofelis nebulosa isolate blood specimen 9 cytochrome b (cytb) gene, partial cds; mitochondrial.
431112201337429 0.972Neofelis diardi haplotype DIS7 D-loop, partial sequence; mitochondrial.
4465111284284 1.000Neofelis nebulosa microsatellite NNE-12 sequence.
4557111948948 1.000Neofelis nebulosa prion protein (PRNP) gene, complete cds.
46112111763763 1.000Neofelis nebulosa androgen receptor (AR) gene, partial cds.
477811166826682 1.000Neofelis nebulosa clone NNE1 carboxylesterase 7-like gene, complete sequence.
488211114221422 1.000Neofelis nebulosa endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
498411123102310 1.000Neofelis nebulosa transferrin receptor protein 1 (TFRC) mRNA, complete cds.
50241111407407 1.000Neofelis nebulosa nebulosa isolate 13-15a_NNE chromosome Y DDX3Y gene, partial sequence.
51242111290290 1.000Neofelis nebulosa nebulosa isolate 13-15b_NNE chromosome Y DDX3Y gene, partial sequence.
52243111296296 1.000Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y DDX3Y gene, intron 16.
53244111435435 1.000Neofelis nebulosa nebulosa isolate 3_NNE chromosome Y DDX3Y gene, intron 3.
54245111292292 1.000Neofelis nebulosa nebulosa isolate 1a_NNE chromosome Y EIF1AY gene, intron 1.
55246111254254 1.000Neofelis nebulosa nebulosa isolate 1b_NNE chromosome Y EIF1AY gene, intron 1.
56247111391391 1.000Neofelis nebulosa nebulosa isolate 2a_NNE chromosome Y EIF1AY gene, intron 2.
57248111377377 1.000Neofelis nebulosa nebulosa isolate 2b_NNE chromosome Y EIF1AY gene, intron 2.
58249111396396 1.000Neofelis nebulosa nebulosa isolate 4_NNE chromosome Y EIF1AY gene, intron 4.
59250111339339 1.000Neofelis nebulosa nebulosa isolate 8_NNE chromosome Y EIF1AY gene, intron 8.
60251111456456 1.000Neofelis nebulosa nebulosa isolate 12-13_NNE chromosome Y SNCY gene, partial sequence.
61252111457457 1.000Neofelis nebulosa nebulosa isolate 13-15_NNE chromosome Y SMCY gene, partial sequence.
62253111464464 1.000Neofelis nebulosa nebulosa isolate 17_NNE chromosome Y SMCY gene, intron 17.
63254111465465 1.000Neofelis nebulosa nebulosa isolate 18-19_NNE chromosome Y SMCY gene, partial sequence.
64255111400400 1.000Neofelis nebulosa nebulosa isolate 19-21_NNE chromosome Y SMCY gene, partial sequence.
65256111459459 1.000Neofelis nebulosa nebulosa isolate 22-23_NNE chromosome Y SMCY gene, partial sequence.
66257111305305 1.000Neofelis nebulosa nebulosa isolate 6_NNE chromosome Y SMCY gene, intron 6.
67258111330330 1.000Neofelis nebulosa nebulosa isolate 10_NNE chromosome Y UBE1Y gene, intron 10.
68259111189189 1.000Neofelis nebulosa nebulosa isolate 13a_NNE chromosome Y USP9Y gene, intron 13.
69260111456456 1.000Neofelis nebulosa nebulosa isolate 13b_NNE chromosome Y USP9Y gene, intron 13.
70261111354354 1.000Neofelis nebulosa nebulosa isolate 14_NNE chromosome Y USP9Y gene, intron 14.
71262111298298 1.000Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y USP9Y gene, intron 16.
72263111338338 1.000Neofelis nebulosa nebulosa isolate 18_NNE chromosome Y USP9Y gene, intron 18.
73264111385385 1.000Neofelis nebulosa nebulosa isolate 2_NNE chromosome Y USP9Y gene, intron 2.
74265111456456 1.000Neofelis nebulosa nebulosa isolate 23_NNE chromosome Y USP9Y gene, intron 23.
75266111338338 1.000Neofelis nebulosa nebulosa isolate 31a_NNE chromosome Y USP9Y gene, intron 31.
76267111343343 1.000Neofelis nebulosa nebulosa isolate 31b_NNE chromosome Y USP9Y gene, intron 31.
77268111456456 1.000Neofelis nebulosa nebulosa isolate 34_NNE chromosome Y USP9Y gene, intron 34.
78269111380380 1.000Neofelis nebulosa nebulosa isolate 35_NNE chromosome Y USP9Y gene, intron 35.
79270111442442 1.000Neofelis nebulosa nebulosa isolate 36_NNE chromosome Y USP9Y gene, intron 36.
80271111460460 1.000Neofelis nebulosa nebulosa isolate 37_NNE chromosome Y USP9Y gene, intron 37.
81272111410410 1.000Neofelis nebulosa nebulosa isolate 41_NNE chromosome Y USP9Y gene, intron 41.
82273111385385 1.000Neofelis nebulosa nebulosa isolate 44_NNE chromosome Y USP9Y gene, intron 44.
83274111417417 1.000Neofelis nebulosa nebulosa isolate 5_NNE chromosome Y USP9Y gene, intron 5.
84275111456456 1.000Neofelis nebulosa nebulosa isolate 12_NNE chromosome Y UTY gene, intron 12.
85276111388388 1.000Neofelis nebulosa nebulosa isolate 13_NNE chromosome Y UTY gene, intron 13.
86277111371371 1.000Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y UTY gene, intron 16.
87278111354354 1.000Neofelis nebulosa nebulosa isolate 25_NNE chromosome Y UTY gene, intron 25.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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