Cluster set at subtree whose root is Pardofelis (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
08131374378 0.996Pardofelis marmorata voucher Pma4 16S ribosomal RNA gene, partial sequence; mitochondrial.
19131220318 0.795Pardofelis marmorata NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
286121382382 1.000Pardofelis marmorata voucher Pma4 12S ribosomal RNA gene, partial sequence; mitochondrial.
359121187187 1.000Pardofelis marmorata voucher Pma5 ATPase 8 (ATP8) gene, partial cds; mitochondrial.
411121384384 1.000Pardofelis marmorata voucher Pma5 cytochrome b (CytB) gene, partial cds; mitochondrial.
517111940940 1.000Pardofelis marmorata Ube1y gene, exon 18 and partial cds.
618111727727 1.000Pardofelis marmorata Zfy gene, intron.
719111791791 1.000Pardofelis marmorata SMCY gene, intron 4.
834111817817 1.000Pardofelis marmorata CALB gene, partial sequence.
927111326326 1.000Pardofelis marmorata CHRNA1 gene, partial sequence.
103511113691369 1.000Pardofelis marmorata CLU gene, partial sequence.
1136111518518 1.000Pardofelis marmorata CMA1 (CMA1) gene, partial cds.
1237111706706 1.000Pardofelis marmorata DGKG2 gene, partial sequence.
1338111412412 1.000Pardofelis marmorata FES gene, partial sequence.
1439111441441 1.000Pardofelis marmorata GATA3 gene, partial sequence.
1540111670670 1.000Pardofelis marmorata GHR (GHR) gene, partial cds.
1641111622622 1.000Pardofelis marmorata GNAZ (GNAZ) gene, partial cds.
1742111576576 1.000Pardofelis marmorata GNB1 gene, partial sequence.
1843111349349 1.000Pardofelis marmorata HK1 gene, partial sequence.
1944111296296 1.000Pardofelis marmorata NCL (NCL) gene, partial cds.
2045111290290 1.000Pardofelis marmorata PNOC (PNOC) gene, partial cds.
2146111473473 1.000Pardofelis marmorata RAG2 (RAG2) gene, partial cds.
2247111551551 1.000Pardofelis marmorata RSA2 gene, partial sequence.
2348111371371 1.000Pardofelis marmorata SIL gene, partial sequence.
2449111585585 1.000Pardofelis marmorata TCP1 (TCP1) gene, partial cds.
2510111885885 1.000Pardofelis marmorata TTR gene, partial sequence.
2650111508508 1.000Pardofelis marmorata ALAS gene, partial sequence.
2751111670670 1.000Pardofelis marmorata ATP-7A (ATP7A) gene, partial cds.
2852111318318 1.000Pardofelis marmorata IL2RG (IL2RG) gene, partial cds.
2953111900900 1.000Pardofelis marmorata PLP gene, partial sequence.
3054111841841 1.000Pardofelis marmorata isolate Pma2 ZFX gene, intron.
315511127302730 1.000Pardofelis marmorata sex-determining region Y protein (SRY) gene, complete cds.
327811164736473 1.000Pardofelis marmorata clone Marbled1 carboxylesterase 7-like gene, complete sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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