Cluster set at subtree whose root is Otocolobus (rel. 194)

Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).
Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00111372372 1.000Otocolobus manul 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
1118111318318 1.000Otocolobus manul NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
23111185185 1.000Otocolobus manul SINE element in Ube1y gene, complete sequence.
3412111811181 1.000Otocolobus manul strain omay zinc finger protein Zfy (Zfy) gene, partial cds.
489111187187 1.000Otocolobus manul MHC class I antigen (FLA-Z) gene, FLA-Z*1 allele, exon 2 and partial cds.
590111218218 1.000Otocolobus manul MHC class I antigen (FLA-Z) gene, FLA-Z*1 allele, exon 3 and partial cds.
613111839839 1.000Otocolobus manul Smcy gene, intron 4, complete sequence.
71411111971197 1.000Otocolobus manul Ube1y gene, exon 18 and partial cds.
815111724724 1.000Otocolobus manul Zfy gene, intron.
91011112741274 1.000Otocolobus manul interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
101121839885 0.974Otocolobus manul TTR gene, partial sequence.
1157111893893 1.000Otocolobus manul beta fibrinogen gene, intron 7.
12911110381038 1.000Otocolobus manul NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial.
135811113681368 1.000Otocolobus manul NADH dehydrogenase subunit 4 (NADH4) gene, partial cds; mitochondrial.
1417111641641 1.000Otocolobus manul APP gene, partial sequence.
1560111813813 1.000Otocolobus manul CALB gene, partial sequence.
1618111326326 1.000Otocolobus manul CHRNA1 gene, partial sequence.
171911113731373 1.000Otocolobus manul CLU gene, partial sequence.
1820111515515 1.000Otocolobus manul CMA1 (CMA1) gene, partial cds.
1921111706706 1.000Otocolobus manul DGKG2 gene, partial sequence.
2022111412412 1.000Otocolobus manul FES gene, partial sequence.
2123111441441 1.000Otocolobus manul GATA3 gene, partial sequence.
2224111670670 1.000Otocolobus manul GHR (GHR) gene, partial cds.
2325111622622 1.000Otocolobus manul GNAZ (GNAZ) gene, partial cds.
2461111576576 1.000Otocolobus manul GNB1 gene, partial sequence.
2526111206206 1.000Otocolobus manul HK1 gene, partial sequence.
2627111296296 1.000Otocolobus manul NCL (NCL) gene, partial cds.
2728111290290 1.000Otocolobus manul PNOC (PNOC) gene, partial cds.
2829111473473 1.000Otocolobus manul RAG2 (RAG2) gene, partial cds.
2930111551551 1.000Otocolobus manul RSA2 gene, partial sequence.
3031111372372 1.000Otocolobus manul SIL gene, partial sequence.
3132111590590 1.000Otocolobus manul TCP1 (TCP1) gene, partial cds.
3233111513513 1.000Otocolobus manul ALAS gene, partial sequence.
3334111670670 1.000Otocolobus manul ATP-7A (ATP7A) gene, partial cds.
3435111318318 1.000Otocolobus manul IL2RG (IL2RG) gene, partial cds.
3536111899899 1.000Otocolobus manul PLP gene, partial sequence.
3637111846846 1.000Otocolobus manul isolate Oma3 ZFX gene, intron.
373811127612761 1.000Otocolobus manul sex-determining region Y protein (SRY) gene, complete cds.
3843121237237 1.000Otocolobus manul MHC class II antigen (Otma-DRB) gene, Otma-DRB*301 allele, exon 2 and partial cds.
3982111748748 1.000Otocolobus manul androgen receptor (AR) gene, partial cds.
4010711123102310 1.000Otocolobus manul transferrin receptor protein 1 (TFRC) mRNA, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view