Cluster set at subtree whose root is Caracal (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00111375375 1.000Caracal caracal 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
1118111318318 1.000Caracal caracal NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
2412111781181 0.999Caracal caracal strain ccax zinc finger protein Zfx (Zfx) gene, partial cds.
389121187187 1.000Caracal caracal MHC class I antigen (FLA-Z) gene, FLA-Z*5 allele, exon 2 and partial cds.
490121218218 1.000Caracal caracal MHC class I antigen (FLA-Z) gene, FLA-Z*5 allele, exon 3 and partial cds.
513111836836 1.000Caracal caracal Smcy gene, intron 4, complete sequence.
614111956956 1.000Caracal caracal Ube1y gene, exon 18 and partial cds.
715111724724 1.000Caracal caracal Zfy gene, intron.
8181111327327 1.000Caracal caracal EPM2B gene repeat region, partial sequence.
917111639639 1.000Caracal caracal APP gene, partial sequence.
1060111817817 1.000Caracal caracal CALB gene, partial sequence.
1118111326326 1.000Caracal caracal CHRNA1 gene, partial sequence.
121911113701370 1.000Caracal caracal CLU gene, partial sequence.
1320111518518 1.000Caracal caracal CMA1 (CMA1) gene, partial cds.
1421111706706 1.000Caracal caracal DGKG2 gene, partial sequence.
1522111412412 1.000Caracal caracal FES gene, partial sequence.
1623111441441 1.000Caracal caracal GATA3 gene, partial sequence.
1724111670670 1.000Caracal caracal GHR (GHR) gene, partial cds.
1825111622622 1.000Caracal caracal GNAZ (GNAZ) gene, partial cds.
1961111573573 1.000Caracal caracal GNB1 gene, partial sequence.
2026111344344 1.000Caracal caracal HK1 gene, partial sequence.
2127111296296 1.000Caracal caracal NCL (NCL) gene, partial cds.
2228111290290 1.000Caracal caracal PNOC (PNOC) gene, partial cds.
2329111473473 1.000Caracal caracal RAG2 (RAG2) gene, partial cds.
2430111548548 1.000Caracal caracal RSA2 gene, partial sequence.
2531111371371 1.000Caracal caracal SIL gene, partial sequence.
2632111590590 1.000Caracal caracal TCP1 gene, partial sequence.
271111885885 1.000Caracal caracal TTR gene, partial sequence.
2833111513513 1.000Caracal caracal ALAS gene, partial sequence.
2934111670670 1.000Caracal caracal ATP-7A (ATP7A) gene, partial cds.
3035111318318 1.000Caracal caracal IL2RG (IL2RG) gene, partial cds.
3136111899899 1.000Caracal caracal PLP gene, partial sequence.
3237111844844 1.000Caracal caracal isolate Cca21 ZFX gene, intron.
333811127542754 1.000Caracal caracal sex-determining region Y protein (SRY) gene, complete cds.
348311164826482 1.000Caracal caracal clone PCL1 carboxylesterase 7-like gene, complete sequence.
3576111657657 1.000Caracal caracal voucher ROM:101193 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
3610711123102310 1.000Caracal caracal transferrin receptor protein 1 (TFRC) mRNA, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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