Cluster set at subtree whose root is Porifera (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-67215092222322163 0.288Tetilla radiata voucher NMRJ576 cytochrome c oxidase subunit I (cox1) gene, partial cds; and putative LAGLIDADG protein gene, complete cds; mitochondrial.
1-73108276681222 0.678Stryphnus mucronatus 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
23-4648396841648 0.729Axinella verrucosa mRNA for elongation factor 1 alpha (ef1a gene).
38-99711612078 0.644Sycon raphanus mRNA for beta-tubulin (tubb gene).
62-3334161682932759 0.574Scypha ciliata 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 5S rRNA gene (partial).
63-3446261372661203 0.499Ephydatia sp. n. 2 PW-2008 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene (partial), isolate 3.
65-346474132253747 0.711Sympagella nux 28S rRNA gene.
66-3494041756236473 0.218Halichondria okadai genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, complete sequence.
69-4747436031290 0.892Dercitus luteus ATP synthase beta chain (ATPB) mRNA, partial cds.
70-191918588591 0.995Cinachyrella alloclada fructose-bisphosphate aldolase (ALD) mRNA, partial cds.
73-666462630 0.953Stelletta fibrosa triose phosphate isomerase (TPI) mRNA, partial cds.
74-384234522795 0.962Callyspongia vaginalis catalase (CAT) mRNA, partial cds.
79-13324348658 0.922Tethya aurantium cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
96-10168381543 0.779Halichondria bowerbanki isolate HalBow30 elongation factor-1 alpha gene, partial cds.
100-88812452327 0.635Sycon raphanus mRNA for heat shock protein 70.
129-55511521603 0.775Lubomirskia baicalensis mRNA for tubulin alpha (tuba gene).
133-461686632889 0.807Agelas sp. QMG317484 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, specimen voucher QMG317484, clone 306_23.
139-13198644757 0.926Clathrina sp. RFW-2001 large subunit ribosomal RNA (rrnL) gene, partial sequence; mitochondrial gene for mitochondrial product.
140-5364464735 0.672Halichondria sp. RFW-2001 ATP synthase F0 subunit 6 gene, complete cds; mitochondrial gene for mitochondrial product.
141-351576608813 0.932Placospongia sp. UCMPWC1094 sequence type 81 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
142-91012242255 0.991Cliona tenuis isolate M32B internal transcribed spacer 1, partial sequence.
143-8623316333 0.979Spirastrella coccinea isolate M120 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
145-9274262265 0.994Cliona laticavicola isolate M52 tRNA-Glu (trnE(uuc)) gene, partial sequence; and NADH dehydrogenase subunit 6 (ND6) gene, partial cds; mitochondrial.
147-999675974 0.946Monanchora arbuscula methionine adenosyltransferase (MAT) mRNA, partial cds.
153-536384490 0.900Chondrilla australiensis 28S ribosomal RNA gene, partial sequence.
154-415385627 0.929Chondrilla sp. 3-KMU-2003 isolate 51SA internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
160-202217117246 0.537Potamolepis sp. ERM-2005 homeobox protein demox gene, partial cds.
162-444516520 0.996Monanchora arbuscula phosphofructokinase (PFK) mRNA, partial cds.
182-103354512040 0.479Lubomirskia baicalensis silicaa-g gene for silicatein alpha, exons 1-7.
183-57410861657 0.773Lubomirskia baicalensis silicatein alpha 3 (SilA3) gene, complete cds.
226-15166547576 0.994Haliclona xena voucher HAP242 NADH dehydrogenase subunit 1 (NAD1) gene, partial cds; mitochondrial.
227-443120120 1.000Halichondria japonica 5S ribosomal RNA (complete sequence).
249-10323475980 0.708Lubomirskia fusifera isolate bs126 tRNA-Ile gene, complete sequence; and tRNA-Met gene, partial sequence; mitochondrial.
287-444451765 0.791Axinella sp. YQ-2012 isolate S2 18S ribosomal RNA gene, partial sequence.
380-10163600699 0.885Demosponge RFW-2001 cytochrome c oxidase subunit III gene, partial cds; mitochondrial gene for mitochondrial product.
388-681525529 0.997Halichondria sp. Halsp-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
396-5471529964 0.586Hymeniacidon heliophila 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, complete sequence, and 28S ribosomal RNA gene, partial sequence.
496-443467507 0.973Thrinacophora sp. G312642 28S large subunit ribosomal RNA gene, partial sequence.
558-555357588 0.921Hyrtios proteus aldolase (ALD) mRNA, partial cds.
579-444586588 0.999Verongula rigida fructose-bisphosphate aldolase (ALD) mRNA, partial cds.
581-17303415892 0.741Aplysina aerophoba 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
585-4111229242 0.974Hexadella dedritifera partial atpB gene for ATP synthetase beta subunit, exons 1-2, haplotype DH3ROC.
591-151568311090 0.934Plakina trilopha 28S ribosomal RNA gene, partial sequence.
618-1127657311048 0.941Leucetta chagosensis 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, specimen voucher GW848_4.
619-20202440470 0.980Clathrina coriacea isolate DC02 28S ribosomal RNA gene, partial sequence.
620-13242720815 0.943Clathrina clathrus isolate CI21 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
743-444792792 1.000Aphrocallistes vastus catalase (Cat) mRNA, partial cds.
747-577636413568 0.873Heterochone calyx mitochondrial partial 16S rRNA gene.
749-786428534 0.931Hyalonema sp. HBOI 23-VIII-93-4-001 partial 28S rRNA gene, isolated from Jamaica.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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