Cluster set at subtree whose root is Microsporidia (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
1-73221156500 0.695Enterocytozoon bieneusi isolate 17411-5-MC-EbITS07022008 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
5-284437211382043 0.410Enterocytozoon bieneusi small subunit ribosomal RNA gene and intergenic spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
16-551193292 0.809Nosema distriae ribosomal RNA large subunit.
17-2644520857292 0.511Microsporidium 57864 16S ribosomal RNA gene, partial sequence, internal transcribed spacer, 5.8S, 23S and 5S ribosomal RNA genes, complete sequence.
18-11043362342108 0.465Nosema antheraeae large subunit ribosomal RNA gene, partial sequence; and internal transcribed spacer, small subunit ribosomal RNA gene, intergenic spacer, and 5S ribosomal RNA gene, complete sequence.
19-88127552968 0.980Nosema trichoplusiae RNA polymerase II largest subunit (RPB1) gene, partial cds.
21-6632100253 0.845Nosema ceranae isolate KS38 16S ribosomal RNA gene, partial sequence.
24-10272232680 0.644Vairimorpha lymantriae 16S ribosomal RNA (16S rRNA), 3'end; non-transcribed spacer; 28S ribosomal RNA (28S rRNA), 5'end.
33-185410202311980 0.443Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
42-101137831202 0.929Nosema plutellae isolate PX2 alpha-tubulin gene, partial cds.
43-141648451211 0.935Nosema plutellae isolate PX2 beta-tubulin gene, partial cds.
44-55113271376 0.972Nosema antheraeae isolate NY RNA polymerase II largest subunit (RPB1) gene, partial cds.
45-161644971371 0.758Antonospora scoticae small subunit ribosomal RNA gene, complete sequence.
46-9941501783 0.660Nosema disstriae large subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and small subunit ribosomal RNA gene, partial sequence.
52-5422107803 0.493Encephalitozoon cuniculi genes for small subunit ribosomal RNA, ITS1, large subunit ribosomal RNA, partial and complete sequence.
64-54833181249 0.500Encephalitozoon cuniculi partial interB gene for putative interB family protein, clone Bsub5_newECU03_EcG_ENCCU.
66-41018681077 0.941Encephalitozoon cuniculi methionine aminopeptidase type 2 (MetAP2) gene, complete cds.
69-8252213409 0.677Microsporidium sp. HEM-2006BIOPE partial 16S rRNA gene, isolate HEM-2006BIOPE.
129-89128257341834 0.701Gurleya vavrai isolate ALO-12 16S small subunit ribosomal RNA gene and internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
138-103758661922 0.604Tubulinosema kingi small subunit ribosomal RNA gene, partial sequence; intergenic spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
148-1114710272022 0.759Pseudonosema cristatellae small subunit ribosomal RNA gene and putative internal transcribed spacer, complete sequences; and putative large subunit ribosomal RNA gene, partial sequence.
245-81913461132 0.791Loma salmonae genotype EF-BC elongation factor 1 alpha gene, partial cds.
248-51226961750 0.715Thelohania contejeani 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, isolate Tcc3APb.
263-773522597 0.943Episeptum sp. MH17 small subunit ribosomal RNA gene, partial sequence.
264-9112346670 0.783Microsporidia sp. 'Dragitschevo' small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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