Cluster set at subtree whose root is Heterolobosea (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-11114611461 1.000Naegleria gruberi gamma tubulin mRNA, complete cds.
1-121510777 0.828Naegleria gruberi ribosomal protein L7A mRNA, complete cds.
2-2318301215 0.892Naegleria andersoni elongation factor 1 alpha (tef1) gene, partial cds.
3-11126022602 1.000Naegleria gruberi translation elongation factor 2 (EF-2) mRNA, complete cds.
4-111199199 1.000Naegleria gruberi mitochondrial single-subunit RNA polymerase (mtRNAP) mRNA, partial cds; nuclear gene for mitochondrial product.
5-11112861286 1.000Naegleria gruberi phosphoglycerate kinase (PGK) mRNA, complete cds.
6-111265265 1.000Naegleria gruberi strain NEG-M meiosis-specific MutS-like protein (Msh4) gene, partial cds.
7-111463463 1.000Naegleria gruberi strain NEG-M meiosis-specific MutS-like protein (Msh5) gene, partial cds.
8-11115461546 1.000Naegleria gruberi transacylase mRNA, complete cds.
9-111214214 1.000Naegleria gruberi NADH dehydrogenase subunit 11 and cytochrome oxidase subunit 3 genes, partial cds; mitochondrial.
10-11115771577 1.000Naegleria gruberi squalene synthase mRNA, complete cds.
11-11111791179 1.000Naegleria gruberi Bluf coupled cyclase (pac1) gene, partial cds.
12-2153201279524 0.741Naegleria chilensis 18S, 5.8S and 23S rRNA gene and ITS 1 and 2, strain NG946.
13-10814893193605 0.425Acrasis helenhemmesae strain AusBG-8-1 18S small subunit ribosomal RNA gene, partial sequence.
14-11119501950 1.000Naegleria gruberi UMP synthase (UMP) gene, complete cds.
15-111389389 1.000Naegleria gruberi ribosomal protein S15 homologue mRNA, 3' end of cds.
16-111955955 1.000Naegleria gruberi ARK-rich protein mRNA, 3' end.
17-11110791079 1.000Naegleria gruberi NEG calcineurin B (CNB1) gene, complete cds.
18-11117101710 1.000Naegleria gruberi NEG flagellar calmodulin (CAM1) gene, complete cds.
19-111654654 1.000Naegleria gruberi centrin (CTN) mRNA, complete cds.
20-47410971467 0.895Naegleria gruberi gene for alpha-tubulin (3).
21-1419113051324 0.991Naegleria sp. NG055 partial group I intron containing ORF1 DNA for hypothetical protein, isolate NG055.
22-6748842321 0.566N.gruberi NbetaT1 gene encoding beta-tubulin.
23-121842904 0.966Naegleria gruberi nucleolar basal body binding protein BN46/51 large subunit mRNA, complete cds.
24-3627841608 0.731Naegleria fowleri actin gene, complete cds.
25-22112521443 0.934Naegleria gruberi chaperonin subunit alpha gene, partial cds.
26-11110681068 1.000Naegleria gruberi thiaminase I (NB1) gene, partial cds.
27-22110621377 0.886Naegleria gruberi 6-phosphogluconate dehydrogenase (gnd) gene, partial cds.
28-11147904790 1.000Naegleria gruberi RNA polymerase II largest subunit (RPB1) gene, partial cds.
29-12113382303 0.790Naegleria gruberi alpha-tubulin TUBA3 (TUBA3) gene, complete cds.
30-12158596264 0.968Naegleria gruberi basal body protein NBP-1 gene, complete cds.
31-11117951795 1.000Naegleria gruberi mRNA for hybrid-cluster protein (priS gene).
32-11113811381 1.000Naegleria gruberi partial mRNA for alcohol dehydrogenase (adh gene).
33-11120042004 1.000Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.
34-111902902 1.000Naegleria gruberi coatomer-like protein beta prime subunit (B'COP) gene, exon 1 and 2 and partial cds.
35-22120622366 0.936Naegleria gruberi heat shock protein 70 mRNA, complete cds.
36-57114751508 0.990Naegleria fowleri isolate 7845 small subunit ribosomal RNA gene, partial sequence; mitochondrial.
37-11114691469 1.000Naegleria gruberi differentiation-specific protein 3'-1 (DS3'-1) gene, complete cds.
38-11116701670 1.000Naegleria gruberi differentiation-specific protein 35-2 (DS35-2) gene, partial cds.
39-111621621 1.000Naegleria gruberi differentiation-specific calcium binding protein 1 (NCBP1) mRNA, complete cds.
40-11115301530 1.000Naegleria gruberi kinesin gene, partial cds.
41-11112121212 1.000Naegleria gruberi kelch-like protein gene, complete cds.
42-111399399 1.000Naegleria gruberi profilin gene, complete cds.
43-11116031603 1.000Naegleria gruberi strain NEG-M prolyl-tRNA synthetase (proS) mRNA, partial cds.
44-11118421842 1.000Naegleria gruberi strain NEG-M alanyl-tRNA synthetase (alaS) gene, partial cds.
45-11110751075 1.000Naegleria gruberi CBS domain-containing protein gene, complete cds.
46-221360615 0.793Naegleria fowleri myohemerythrin (ARG-1) gene, complete cds.
47-111922922 1.000Naegleria fowleri gene for amino acid decarboxylase, partial cds.
48-111360360 1.000Naegleria fowleri ATPase subunit 6 (oli2) gene, partial cds; mitochondrial gene for mitochondrial product.
49-11115771577 1.000Naegleria fowleri virulence-related protein (NF314) mRNA, complete cds.
50-11114821482 1.000Naegleria fowleri pyrophosphate-dependent phosphofructo-1-kinase mRNA, complete cds.
51-111371371 1.000Naegleria fowleri phage T3/T7-like RNA polymerase gene, partial cds.
52-111190190 1.000Naegleria fowleri calmodulin (CAM) gene, partial cds.
53-11112821282 1.000Naegleria fowleri Tat-binding protein homolog mRNA, complete cds.
54-11110961096 1.000Naegleria fowleri unknown mRNA, partial cds.
55-111954954 1.000Naegleria fowleri unknown mRNA, partial cds.
56-11110801080 1.000Naegleria fowleri cysteine proteinase homolog mRNA, partial cds.
57-11118751875 1.000Naegleria fowleri penicillin amidase homolog mRNA, partial cds.
58-111766766 1.000Naegleria fowleri thioredoxin homolog mRNA, complete cds.
59-111384384 1.000Naegleria fowleri unknown mRNA, partial cds.
60-111596596 1.000Naegleria fowleri unknown mRNA, partial cds.
61-11118891889 1.000Naegleria fowleri heat-shock protein SSE1 homolog mRNA, partial cds.
62-11113011301 1.000Naegleria fowleri unknown mRNA, partial cds.
63-111606606 1.000Naegleria fowleri 40s ribosomal protein S9 homolog mRNA, complete cds.
64-111628628 1.000Naegleria fowleri fructose-1,6-bisphosphatase homolog mRNA, partial cds.
65-111771771 1.000Naegleria fowleri glutathione S-transferase III homolog mRNA, complete cds.
66-11112371237 1.000Naegleria fowleri unknown mRNA, partial cds.
67-121355367 0.984Naegleria fowleri ubiquitin mRNA, partial cds.
68-11115101510 1.000Naegleria fowleri unknown mRNA, complete cds.
69-11122862286 1.000Naegleria fowleri myosin II heavy chain mRNA, partial cds.
70-11110841084 1.000Naegleria fowleri cpn-60 gene, partial cds.
71-1219891097 0.951Naegleria fowleri naegleriapore A precursor (NP-A) gene, partial cds.
72-12115131693 0.947Naegleria fowleri naegleriapore B precursor (NP-B) gene, partial cds.
73-111573573 1.000Naegleria fowleri calcineurin B (nfa-2) gene, complete cds.
74-111630630 1.000Naegleria fowleri high mobility group protein mRNA, complete cds.
75-111420420 1.000Naegleria fowleri 26S proteasome subunit mRNA, partial cds.
76-111650650 1.000Naegleria fowleri membrane protein (mp2Cl5) mRNA, complete cds.
77-241491597 0.921Naegleria fowleri isolate 7852 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
78-111895895 1.000Naegleria andersoni glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, partial cds.
79-111747747 1.000Naegleria jadini 5.8S SSU rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and LSU rRNA gene.
80-111986986 1.000Naegleria lovaniensis strain C-0490 repetitive DNA sequence.
81-111767767 1.000Naegleria minor SSU rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and LSU rRNA gene.
82-2219191214 0.879Naegleria morganensis partial SSU, group I intron, ORF1 for putative endonuclease and partial LSU.
83-1219001130 0.898Naegleria sp. NG874 partial SSU, group I intron, ORF1 for putative endonuclease and partial LSU.
84-551508665 0.897Naegleria arctica 5.8S rRNA gene, ITS1 and ITS2, isolate SP5.
85-111609609 1.000Naegleria sp. 543 18S ribosomal RNA gene, partial sequence.
86-11112551255 1.000Naegleria sp. 552 18S ribosomal RNA gene, partial sequence.
87-331375375 1.000Naegleria sp. NG597 group I intron, strain NG597.
88-111389389 1.000Naegleria sp. NG236 LSU rRNA gene group I intron, 389bp.
89-111474474 1.000Naegleria sp. NG872 LSU rRNA gene group I intron.
90-11136853685 1.000Naegleria sp. TES-2005 Sir2-like protein gene, partial cds; and putative mitochondrial T-odd phage-like single-subunit RNA polymerase gene, complete cds; nuclear gene for mitochondrial product.
91-441198209 0.974Naegleria sp. NG332 group I like ribozyme GIR1, strain NG332.
92-221117124 0.972Naegleria sp. CS1 18S ribosomal RNA gene, partial sequence.
93-11110311031 1.000Naegleria sp. CS28 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
94-11132398561 0.916Learamoeba sp. RLA457 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence.
95-111523523 1.000Tetramitus thermacidophilus ITS1, 5.8S rRNA gene and ITS2, ecotype Pzc6.
96-553512535 0.977Tetramitus lobospinosus ITS1, 5.8S rRNA gene and ITS2, type strain ATCC30298T.
97-111842842 1.000Willaertia magna SSU rRNA gene, 5' end, strain Z503.
98-111209209 1.000Willaertia magna SSU rRNA gene, internal fragment, strain Z503.
99-111662662 1.000Willaertia magna SSU rRNA gene, 3' end, strain Z503.
100-111490490 1.000Willaertia magna LSU rRNA gene, SSU rRNA gene, ITS1, 5.8S rRNA gene and ITS2.
101-581316347 0.967Vahlkampfia ciguana ITS1, 5.8S rRNA gene and ITS2.
102-474621666 0.959Singhamoeba horticola clone CF2-102 18S ribosomal RNA gene, partial sequence.
103-111659659 1.000Vahlkampfia inornata ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1588/2T.
104-11118431843 1.000Vahlkampfia damariscottae SSU rRNA gene, strain CCAP 1588/7.
105-111414414 1.000Neovahlkampfia damariscottae ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1588/7T.
106-66118762371 0.834Heterolobosea sp. FUM1 18S rRNA gene, strain FUM1.
107-221592600 0.993Paravahlkampfia sp. CDC V595 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
108-111301301 1.000Vahlkampfia sp. 1105 ITS1, 5.8S rRNA gene and ITS2, isolate 1105.
109-111676676 1.000Paravahlkampfia sp. 6/3Ab/1B ITS1, 5.8S rRNA gene and ITS2, isolate 6/3Ab/1B.
110-221662709 0.967Vahlkampfia sp. S10 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
111-11114291429 1.000Paravahlkampfia sp. LA mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.
112-3111293730 0.907Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI456.
113-111299299 1.000Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI499.
114-111540540 1.000Vahlkampfia sp. AK-2007 genes for ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: RUI526.
115-111532532 1.000Vahlkampfiidae sp. strain SO/1P small subunit ribosomal RNA gene, partial sequence.
116-111426426 1.000Vahlkampfia sp. VICL-6 18S ribosomal RNA gene, partial sequence.
117-111584584 1.000Vahlkampfia sp. V103 genomic DNA containing ITS1, 5.8S rRNA gene, ITS2, isolate V103.
118-111693693 1.000Acrasis rosea triosephosphate isomerase (TPI) gene, partial cds.
119-111190190 1.000Acrasis rosea calmodulin (CAM) gene, partial cds.
120-111898898 1.000Acrasis rosea glyceraldehyde-3-phosphate dehydrogenase gene, partial cds.
121-11112041204 1.000Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds.
122-111941941 1.000Acrasis rosea alpha-tubulin gene, partial cds.
123-11114971497 1.000Acrasis rosea chaperonin subunit alpha gene, partial cds.
124-11113291329 1.000Acrasis rosea 6-phosphogluconate dehydrogenase (gnd) gene, partial cds.
125-11118751875 1.000Stachyamoeba sp. ATCC 50324 16S-like ribosomal RNA gene, complete sequence.
126-24217851997 0.947Plaesiobystra hypersalinica 16S-like ribosomal RNA gene, complete sequence.
127-111516516 1.000Heteramoeba clara ITS1, 5.8S rRNA gene and ITS2, type strain CCAP1536/1T.
128-11110111011 1.000Percolomonas cosmopolitus HSP90 gene, partial cds.
129-11130843084 1.000Percolomonas cosmopolitus strain ATCC 50343 RNA polymerase II largest subunit (RPB1) gene, partial cds.
130-11121002100 1.000Percolomonas cosmopolitus 16S-like ribosomal RNA gene, complete sequence.
131-11118101810 1.000Percolomonas cosmopolitus 18S ribosomal RNA gene, partial sequence.
132-11113951395 1.000Stephanopogon colpoda small subunit ribosomal RNA gene, partial sequence.
133-251763796 0.985Stephanopogon apogon actin gene, partial cds.
134-11119491949 1.000Stephanopogon apogon 18S ribosomal RNA gene, partial sequence.
135-111631631 1.000Stephanopogon apogon 18S ribosomal RNA gene, partial sequence.
136-11122112211 1.000Stephanopogon apogon 18S ribosomal RNA gene, partial sequence.
137-11110381038 1.000Stephanopogon apogon HSP90 gene, partial cds.
138-1119001900 1.000Soil amoeba AND9 18S ribosomal RNA gene, partial sequence.
139-11145244524 1.000Rosculus sp. ATCC 50888 mitochondrial single-subunit RNA polymerase (mtRNAP) gene, complete cds; nuclear gene for mitochondrial product.
140-11126502650 1.000Stygamoeba sp. ruffled mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.
141-11932932 1.000Heterolobosea sp. OSA mitochondrial single-subunit RNA polymerase (mtRNAP) gene, partial cds; nuclear gene for mitochondrial product.
142-11125982598 1.000Pleurostomum flabellatum strain EHF1 18S ribosomal RNA gene, partial sequence.
143-11114071407 1.000Stachyamoeba lipophora elongation factor 1 alpha mRNA, complete cds.
144-11121262126 1.000Stephanopogon minuta gene for 18S ribosomal RNA, partial sequence.
145-111498498 1.000Allovahlkampfia spelaea strain SK1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
146-11456456 1.000Heterolobosea sp. EV10A ITS1, 5.8S rRNA gene and ITS2, isolate EV10A.
147-22117851813 0.992Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence.
148-111829829 1.000Vrihiamoeba italica genes for ITS1, 5.8S rRNA, ITS2, partial and complete sequence.
149-11119771977 1.000Stygamoeba regulata strain ATCC 50892 small subunit ribosomal RNA gene, partial sequence.
150-111796796 1.000Stygamoeba regulata strain ATCC 50892 clone 1 actin gene, partial cds.
151-111444444 1.000Psalteriomonas lanterna mitochondrial complex I subunit mRNA, partial cds; hydrogenosome.
152-111894894 1.000Psalteriomonas lanterna ADP-ATP carrier protein mRNA, partial cds; hydrogenosome.
153-11110741074 1.000Psalteriomonas lanterna propionyl-CoA carboxylase beta subunit mRNA, partial cds; hydrogenosome.
154-22217852007 0.945Sawyeria marylandensis type B Fe-hydrogenase mRNA, partial cds.
155-11114821482 1.000Psalteriomonas lanterna pyruvate-ferrodoxin oxidoreductase (PFO) mRNA, partial cds; hydrogenosome.
156-11112411241 1.000Psalteriomonas lanterna elongation factor 1 alpha (EF-1alpha) mRNA, partial cds; hydrogenosome.
157-111717717 1.000Psalteriomonas lanterna heat shock protein 60 (HSP60) mRNA, partial cds; hydrogenosome.
158-11112541254 1.000Psalteriomonas lanterna glutamate dehydrogenase mRNA, partial cds; hydrogenosome.
159-314216271950 0.913Sawyeria marylandensis small subunit ribosomal RNA gene, complete sequence.
160-111397397 1.000P.lanterna mRNA for ferredoxin.
161-111195195 1.000Psalteriomonas lanterna UBI1 gene.
162-111342342 1.000Psalteriomonas lanterna partial hyd gene for [Fe]-hydrogenase.
163-35121513325 0.819Heterolobosea sp. AGBS-2011 strain AS12B 18S ribosomal RNA gene, partial sequence.
164-319216741913 0.964Harpagon descissus strain WS small subunit ribosomal RNA gene, partial sequence.
165-11137143714 1.000Sawyeria marylandensis pyruvate:ferredoxin oxidoreductase mRNA, partial cds.
166-11120222022 1.000Sawyeria marylandensis type A Fe-hydrogenase mRNA, partial cds.
167-11113201320 1.000Sawyeria marylandensis NADH dehydrogenase 51 kDa subunit mRNA, partial cds.
168-11118871887 1.000Sawyeria marylandensis heat shock protein 70 mRNA, partial cds.
169-11113081308 1.000Sawyeria marylandensis IscS mRNA, partial cds.
170-111462462 1.000Sawyeria marylandensis IscU mRNA, partial cds.
171-111285285 1.000Sawyeria marylandensis Cpn10 mRNA, partial cds.
172-11114401440 1.000Sawyeria marylandensis dihydrolipoamide dehydrogenase mRNA, partial cds.
173-111923923 1.000Sawyeria marylandensis Scs alpha mRNA, partial cds.
174-11112451245 1.000Sawyeria marylandensis Scs beta mRNA, partial cds.
175-11116471647 1.000Sawyeria marylandensis hydrogenase maturase mRNA, complete cds.
176-11110511051 1.000Sawyeria marylandensis mitochondrial cpn60 mRNA, partial cds; nuclear gene for mitochondrial product.
177-11364364 1.000Heterolobosea sp. SAN2 ITS1, 5.8S rRNA gene and ITS2, strain SAN2.
178-1129052905 1.000Heterolobosea sp. SAN2 18S rRNA gene, strain SAN2.
179-11671671 1.000Heterolobosea sp. SPF-2010 18S ribosomal RNA gene, partial sequence.
180-11652652 1.000Heterolobosea sp. SPF-2010 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
181-11412412 1.000Heterolobosea sp. FUM1 ITS1, 5.8S rRNA and ITS2, strain FUM1.
182-12118861937 0.987Pseudoharpagon pertyi strain EVROS2 small subunit ribosomal RNA gene, partial sequence.
183-1123922392 1.000Heterolobosea sp. BB2 18S ribosomal RNA gene, partial sequence.
184-111499499 1.000Selenaion koniopes internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
185-11119671967 1.000Selenaion koniopes 18S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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