Cluster set at subtree whose root is Parabasalia (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-1945149091492 0.760Holomastigotoides mirabile atub mRNA for alpha tubulin, partial cds.
1-273453512972046 0.698Tritrichomonas foetus 18S, 5.8S, and 28S ribosomal RNA genes.
4-2969207791368 0.672Histomonas meleagridis partial mRNA for putative elongation factor 1-alpha (tef1 gene), clone 79a/1.
8-5547079 0.965Pentatrichomonas hominis 28S ribosomal RNA.
9-887176200 0.931Monocercomonas sp. 28S ribosomal RNA.
11-4439701246 0.844Trichomonas tenax putative cytosolic malate dehydrogenase (MDH) mRNA, partial cds.
13-3781288411190 0.780Holomastigotoides mirabile mRNA for actin, complete cds, clone: 06A34.
16-632784129489 0.721Tetratrichomonas prowazeki strain SL small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
17-7765961 0.993Tritrichomonas augusta 28S ribosomal RNA.
22-13231311202009 0.633Histomonas meleagridis serine/threonine phosphotase and beta-tubulin 2 genes, partial cds.
27-410130195266 0.621Trichomonas sp. RWG-2007-2 RNA polymerase II largest subunit (Rpb1) gene, partial cds.
44-8928501128 0.870Trichonympha agilis gapdh mRNA for glyceraldehyde-3-phosphate dehydrogenase, complete cds.
47-101568381152 0.950Eucomonympha sp. HsEE2 gene for elongation factor-1 alpha, partial cds, clone: HsEE2.
52-5512631265 0.999Zootermopsis parabasalian symbiont 30 enolase mRNA, partial cds.
70-78114651485 0.996Trichonympha acuta small subunit ribosomal RNA gene, partial sequence.
77-12773208507 0.664Tritrichomonas sp. AUTf isolate AUTf-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
84-4184328513 0.740Parahistomonas wenrichi isolate AL411F6 clone 3 small subunit ribosomal RNA gene, partial sequence.
109-494961991 0.980Trichomitus batrachorum enolase 1 gene, partial cds.
186-1627129421079 0.934Stephanonympha sp. Nk3 gap3 mRNA for glyceraldehyde-3-phosphate dehydrogenase, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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