Cluster set at subtree whose root is Jakobida (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-12123862440 0.989Reclinomonas americana vacuolar protein sorting protein 35-2 (VPS35-2) gene, partial cds.
1-111618618 1.000Reclinomonas americana Rpl7A mRNA, partial cds.
2-11113571357 1.000Reclinomonas americana Rpl7A gene, partial cds.
3-111799799 1.000Reclinomonas americana Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.
4-11125802580 1.000Reclinomonas americana cytosolic heat shock protein 90 (HSP90) gene, partial cds.
5-11114461446 1.000Reclinomonas americana cytosolic heat shock protein 70 (HSP70) gene, partial cds.
6-11124182418 1.000Reclinomonas americana translation elongation factor 2 (EF-2) gene, partial cds.
7-57412491860 0.827Seculamonas ecuadoriensis elongation factor 1 alpha mRNA, complete cds.
8-111114114 1.000Reclinomonas americana 5S ribosomal RNA (rrn5) gene, mitochondrial gene encoding mitochondrial rRNA.
9-59417521942 0.947Jakoba incarcerata small subunit ribosomal RNA gene, complete sequence.
10-46311531237 0.946Reclinomonas americana alpha-tubulin gene, partial cds.
11-48311621319 0.924Jakoba libera clone 3 beta-tubulin gene, partial cds.
12-12118801888 0.998Reclinomonas americana strain 50394 chaperonin subunit alpha gene, partial cds.
13-121843845 0.999Reclinomonas americana ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.
14-111750750 1.000Jakoba libera Rpl7A mRNA, partial cds.
15-111922922 1.000Jakoba libera Rpl7A gene, partial cds.
16-121534574 0.965Jakoba libera glycosyl hydrolase mRNA, partial cds.
17-111249249 1.000Jakoba libera sphingosine phosphate lyase-like protein mRNA, partial cds.
18-111567567 1.000Jakoba libera NADPH:quinone reductase-like protein mRNA, partial cds.
19-11113791379 1.000Jakoba libera actin pseudogene, partial sequence.
20-111915915 1.000Jakoba libera ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.
21-111667667 1.000Jakoba bahamiensis ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.
22-111653653 1.000Seculamonas ecuadoriensis Rpl7A mRNA, partial cds.
23-11110921092 1.000Seculamonas ecuadoriensis Rpl7A gene, partial cds.
24-111558558 1.000Seculamonas ecuadoriensis aminopeptidase-like protein mRNA, partial cds.
25-111783783 1.000Seculamonas ecuadoriensis ATP synthase F0 subunit b (atp4) gene, complete cds; mitochondrial gene for mitochondrial product.
26-111846846 1.000Andalucia incarcerata isolate MB1 actin gene, partial cds.
27-11112041204 1.000Andalucia incarcerata isolate MB1 translation elongation factor 1 alpha gene, partial cds.
28-11122812281 1.000Andalucia incarcerata isolate MB1 translation elongation factor 2 gene, partial cds.
29-11117601760 1.000Andalucia incarcerata isolate MB1 cytosolic heat shock protein 90 gene, partial cds.
30-11121492149 1.000Andalucia incarcerata mRNA for squalene-tetrahymanol cyclase, complete cds.
31-111846846 1.000Andalucia godoyi isolate AND28 actin gene, partial cds.
32-11112041204 1.000Andalucia godoyi isolate AND28 translation elongation factor 1 alpha gene, partial cds.
33-11122822282 1.000Andalucia godoyi isolate AND28 translation elongation factor 2 gene, partial cds.
34-11113871387 1.000Andalucia godoyi isolate AND28 cytosolic heat shock protein 70 gene, partial cds.
35-11119301930 1.000Andalucia godoyi isolate AND28 cytosolic heat shock protein 90 gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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