Cluster set at subtree whose root is Amoebozoa (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
9-4146130154313 0.962Dictyostelium citrinum strain WS584 17S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
12-132274312892551 0.815Polysphondylium violaceum strain QSvi9 17S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
15-444688421431 0.757Nolandella sp. ATCC PRA-27 alpha-tubulin gene, partial cds.
19-71818231036 0.893Dictyostelium mucoroides 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
20-7111905984 0.962Dictyostelium mucoroides 18S rRNA gene (partial), 5.8S rRNA gene, 26S rRNA gene (partial), ITS1 and ITS2, isolate AR4B.
35-88126863478 0.867Dictyostelium citrinum C-module-binding factor (cbfA) gene, partial cds.
39-1256209368873583 0.265Acanthamoeba sp. KA/MSG23 18S ribosomal RNA gene, complete sequence.
56-89104352342274 0.422Semimorula liquescens elongation factor 1F-alpha (EF1A) gene, partial cds.
72-46314312079 0.918Acytostelium subglobosum clone ADB0002342 heat shock cognate protein Hsc70-2 gene, complete cds.
182-77992011714209 0.495Fuligo leviderma voucher AMFD130 small subunit ribosomal RNA gene, partial sequence.
185-555361365 0.995UNVERIFIED: Arcyria obvelata EF-1a-like gene, partial sequence.
186-510411001858 0.836Stemonitis flavogenita cytochrome c oxidase subunit 1 (COI) mRNA, complete cds; mitochondrial gene for mitochondrial product.
188-438194861102 0.515Lamproderma aeneum voucher AK06013 18S ribosomal RNA gene, partial sequence.
189-121211568594 0.992Craterium leucocephalum 16S ribosomal RNA gene, partial sequence; mitochondrial.
191-555387404 0.990Hemitrichia clavata 12S ribosomal RNA gene, partial sequence.
222-97227114181262 0.372Didymium melanospermum gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: AK-06089.
225-58187383341754 0.473Thecamoeba similis actin mRNA, complete cds.
268-10104161213 0.833Physarum nudum small subunit ribosomal RNA gene, partial sequence.
316-44219982205 0.953Didymium anellus partial 26S rRNA gene, isolate Pr3-1.
328-44122453459 0.785Diderma meyerae partial 28S rRNA gene, isolate It-K61.
366-59114812250 0.883Cochliopodium minus 18S ribosomal RNA gene, partial sequence.
375-381659301715 0.745Parvamoeba rugata strain CCAP 1556/1 clone 1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
381-472651778 0.921Vannella persistens gene for 18S ribosomal RNA, partial sequence, strain: NHE(Vp)10-IR.
383-88213101713 0.959Vannella sp. GERL14 small subunit ribosomal RNA gene, partial sequence.
384-882448511 0.965Vannella sp. strain S98M8/I internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
396-815223722524 0.981Sappinia pedata strain AUK06-2-1 small subunit ribosomal RNA gene, partial sequence.
496-442736800 0.975Hartmannella sp. V13 partial 18S rRNA, isolate V13.
506-771665694 0.970Hartmannella sp. V13 genomic DNA containing ITS1, 5.8S rRNA gene, ITS2, isolate V13.
590-2712511632432 0.659Entamoeba nuttalli genes for 18S rRNA, ITS, 5.8S rRNA, ITS2, 28S rRNA, complete and partial sequence, strain: LH4.
599-45118572704 0.928Entamoeba invadens adhE gene for alcohol dehydrogenase E.
608-41913991131 0.607Entamoeba dispar mRNA for peroxiredoxin, complete cds.
643-5101431938 0.656Entamoeba coli partial 18S rRNA gene, isolate A841.
647-58110722832 0.553Entamoeba nuttalli cpn60 gene for chaperonin 60, complete cds, strain: EHMfas1.
751-8221523586 0.939Entamoeba sp. NPGL93/BEL small subunit ribosomal RNA gene, partial sequence.
801-2878115001559 0.975Acanthamoeba tubiashi strain OC15C 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
802-42318083 0.965Acanthamoeba sp. from Pakistan 26S ribosomal RNA gene, partial sequence.
804-68110471281 0.870Acanthamoeba polyphaga beta tubulin mRNA, partial cds.
806-8111559847 0.843Acanthamoeba sp. ATCC 50496 tRNA-Ile (trnI2), tRNA-Ala (trnA), tRNA-Pro (trnP), tRNA-Asp (trnD), and tRNA-Met (trnM) genes, complete sequence; mitochondrial.
822-24261229310 0.759Acanthamoeba sp. ICL-17/T11 isolate ICL-17 18S ribosomal RNA gene, partial sequence.
831-11111384438 0.943Acanthamoeba sp. Hold internal transcribed spacer 1, complete sequence.
879-57225872741 0.962Phreatamoeba balamuthi ribosomal RNA small subunit gene.
966-881119151 0.949Acanthamoeba sp. A6 DEA-2009 18S ribosomal RNA gene, partial sequence.
967-881116116 1.000Acanthamoeba sp. HK-S25 gene for 18S rRNA, partial sequence.
974-77111911225 0.983Acanthamoeba sp. TSP07/T17 18S ribosomal RNA gene, partial sequence.
983-111110241792 0.806Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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