Cluster set at subtree whose root is Apusozoa (rel. 194)

Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).
Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-111671671 1.000Apusomonas proboscidea strain CCAP 1905/1 elongation factor 1 alpha (ef1a) gene, partial cds.
1-30511014671901 0.930Amastigomonas sp. 2 Bamfield 18S ribosomal RNA gene, partial sequence.
2-4747091453 0.652Apusomonas proboscidea clone apactin1g actin gene, partial cds.
3-22216761906 0.940Apusomonas proboscidea clone aphsp90 Hsp90 mRNA, partial cds.
4-910728024531 0.804Amastigomonas bermudensis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
5-2428911811 0.764Apusomonas proboscidea clone aptub13 beta tubulin gene, partial cds.
6-4547731153 0.862Apusomonas proboscidea clone aptuab alpha tubulin mRNA, partial cds.
7-11111821182 1.000Apusomonas proboscidea HFCC47 28S ribosomal RNA gene, partial sequence.
8-251476568 0.937Ancyromonas sigmoides strain HFCC62 28S ribosomal RNA gene, partial sequence.
9-1615711306 0.860Planomonas mylnikovi strain B-70 clone 04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
10-222153192 0.898Planomonas micra strain ATCC 50267 polyubiquitin (pub) gene, partial cds.
11-111776776 1.000Amastigomonas debruynei bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) gene, partial cds.
12-111784784 1.000Micronuclearia podoventralis isolate MiAc54_1 actin gene, partial cds.
13-21818531022 0.970Planomonas limna strain 116 clone 02 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
14-11160096009 1.000Planomonas sp. 3b 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
15-11157345734 1.000Amastigomonas sp. EEG-2010a 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
16-111586586 1.000Ancyromonas atlantica strain pen1 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
17-111522522 1.000Ancyromonas indica strain af 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
18-111520520 1.000Ancyromonas kenti strain edm11b 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
19-341372406 0.959Nutomonas limna strain 120 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
20-111392392 1.000Nutomonas longa strain ncfw 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
21-111552552 1.000Planomonas micra strain ATCC 50267 elongation factor 1 alpha (ef1a) gene, partial cds.
22-31715581152 0.854Planomonas micra strain ATCC 50267 clone 09 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
23-11110291029 1.000Planomonas micra HSP90 gene, partial cds.
24-131481483 0.998Fabomonas tropica strain il19 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
25-111595595 1.000Planomonas brevis strain cy 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view