Cluster set at subtree whose root is Rhizaria (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-4479311561108 0.356Cercomonas ATCC50316 isolate pub4 polyubiquitin gene, partial cds.
4-16104173121439 0.496Chlorarachnion CCMP240 16S ribosomal RNA gene, chloroplast gene for chloroplast RNA, complete sequence.
5-38017271333674038 0.271Globobulimina turgida isolate 3601 small subunit ribosomal RNA gene, complete sequence.
8-1111910791554 0.862Bulimina marginata RNA polymerase II largest subunit (RPB1) gene, partial cds.
12-33331426453 0.973Orbulina sp. SSU rRNA gene, partial (isolate A495).
13-1723157861788 0.622R.filosa mRNA for beta-tubulin, clone b472.
32-84634061499 0.451G.mediterranensis gene for 28S ribosomal RNA.
39-7106514892 0.831Cibicides refulgens isolate 2068 small subunit ribosomal RNA gene, complete sequence.
40-70171496191497 0.653Allogromia sp. A clone Alo159_5 actin type 2 gene, partial cds.
43-44410221107 0.970Planorbulina mediterranensis isolate 142.27 small subunit ribosomal RNA gene, partial sequence.
46-8147393495 0.909Heterostegina depressa partial 28S rRNA gene, isolate 282.
49-25481610791410 0.849Nonionella labradorica isolate 4836 small subunit ribosomal RNA gene, partial sequence.
52-61841364635 0.643A.beccarii LSU rRNA gene (clone DEB5).
62-6441923994 0.955Bulimina sp. BMK002 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
63-491444869 0.939Foraminiferan sp. X361 partial 18S rRNA gene, clone X36102ssu.
67-42419581033 0.963Chilostomella ovoidea clone J59-16 small subunit ribosomal RNA gene, partial sequence.
75-28291267288 0.969Psammosphaera sp. A155 partial 18S rRNA gene, isolate A155.
76-262810440712 0.793Margaritella sp. 28S rRNA gene.
77-57410441542585122 0.312Actinomma boreale isolate 43 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
82-15241410311616 0.753R.filosa mRNA for alpha-tubulin, clone a111.
93-14142314361 0.904Hippocrepinella sp. A335 partial 18S rRNA gene, isolate A335.
105-4112290378 0.910Astrammina rara partial 18S rRNA gene, isolate A44.
107-441323326 0.995Hemisphaerammina sp. 1084 partial 18S rRNA gene, isolate 1084.
117-1826158411534 0.696Heteromita globosa beta-tubulin (Btub) gene, partial cds.
129-124216144902744 0.330Borelis schlumbergeri 18S rRNA gene, isolate 191.
145-4815727549758 0.950Acanthocolla cruciata isolate Oki28 28S ribosomal RNA gene, partial sequence.
146-7101247304 0.925Bonamia sp. Ca 1-16 011005E1.16 small subunit ribosomal RNA gene, partial sequence.
149-5681340715 0.731Bonamia sp. ex Ostrea stentina clone C small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence.
157-453781869 0.959Thalassicolla pellucida actin (ACT) gene, partial cds.
263-56315241739 0.940Lotharella globosa translation elongation factor 1A-like mRNA, complete cds.
273-481595661 0.926Lotharella sp. CCMP622 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; nucleomorph.
402-401721293412 0.903Marteilia refringens clone G_Oy20.1 internal transcribed spacer 1, partial sequence.
413-22221577696 0.907Cercomonas kiaerdammane strain NY12 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
415-19192683731 0.964Cercozoa sp. WA60ap124at20LS 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
416-2526411951334 0.963Cercomonas sp. HFCC52 28S ribosomal RNA gene, partial sequence.
419-551524562 0.968Cercomonas clavideferens strain ATCC 50319 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
423-991537567 0.970Paracercomonas compacta strain xt198 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
424-17171195369 0.882Eocercomonas sp. PT208-20 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
425-661576624 0.971Paracercomonas sp. 9-NZ 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
426-661196203 0.975Paracercomonas sp. P111 internal transcribed spacer 1, partial sequence.
427-16161645667 0.980Paracercomonas sp. DB-1002-6 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
429-551609662 0.941Eocercomonas uvella strain 11-7E 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
467-6302502769 0.728Pseudocorythion acutum isolate Galata 2 cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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