Cluster set at subtree whose root is Chytridiomycota (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-212311536202620 0.499Spizellomyces punctatus isolate AFTOL-ID 182 18S small subunit ribosomal RNA gene, partial sequence.
1-306481495191511 0.558Spizellomyces sp. CC 410F voucher U. Alabama CC 410F 28S ribosomal RNA gene, partial sequence.
2-99917192203 0.853Gonapodya sp. JEL183 EF2 gene for translation elongation factor 2, partial cds, strain: JEL 183.
3-5726321327 0.600Chytriomyces sp. Mori T6 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
4-43432521404693 0.679Karlingiomyces sp. JEL93 isolate AFTOL-ID 629 28S ribosomal RNA gene, partial sequence.
14-384028314929 0.605Spizellomyces kniepii strain UGA-F 18S ribosomal RNA gene, partial sequence.
15-1217106951837 0.773Harpochytrium sp. JEL94 beta-tubulin 1 (btub1) gene, partial cds.
16-1414127011603 0.767Monoblepharella sp. M15 isolate AFTOL-ID 25 elongation factor 1-alpha (EF1-alpha) gene, partial cds.
18-888666972 0.883Monoblepharis polymorpha voucher JEL486 actin gene, partial cds.
19-91189941458 0.866Powellomyces variabilis alpha-tubulin (atub) gene, partial cds.
49-452732865 0.911Spizellomyces acuminatus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
54-592400747 0.814Spizellomyces plurigibbosus voucher DAOM BR 033 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
55-12545533694 0.846Geranomyces variabilis voucher PL161 elongation factor 1-alpha-like protein (EFL) gene, partial cds.
68-444452512 0.966Spizellomyces pseudodichotomus strain FSU 2638 18S ribosomal RNA (SSU) gene, partial sequence.
70-5102626741 0.932Gaertneriomyces spectabile voucher NTNUB 067 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
89-552551643 0.933Triparticalcar sp. JEL 554 voucher U. Maine JEL 554 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
112-661634769 0.910Powellomyces sp. PL 142 voucher U. Alabama PL 142 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
122-882490588 0.920Rhizophydium sp. BR1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
128-19191636884 0.851Rhizophydium sp. PL-149A internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
133-571761795 0.971Rhizophydium pollinis-pini isolate ARG069 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
136-671607681 0.945Rhizophydiales sp. ARG009 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
137-45473562613 0.930Boothiomyces sp. ARG040 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
138-661675716 0.984Rhizophydiales sp. ARG070 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
185-771566856 0.742Kappamyces sp. PL-118 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
214-461590689 0.929Monoblepharis macrandra strain ATCC MYA-4804 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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