Cluster set at subtree whose root is Leopardus (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
50791282381 0.928Oncifelis geoffroyi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
64341721235238 0.999Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0313 allele, exon 2 and partial cds.
7885163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
94510111551181 0.996Leopardus pardalis strain LpaX zinc finger protein Zfx (Zfx) gene, partial cds.
1617671640641 0.999Leopardus pardalis amyloid beta precursor protein (APP) gene, partial cds.
2529671423473 0.985Leopardus tigrinus RAG2 (RAG2) gene, partial cds.
3013661791842 0.987Leopardus wiedii Smcy gene, intron 4, complete sequence.
3114661959961 0.999Oncifelis guigna Ube1y gene, exon 18 and partial cds.
3215661725729 0.998Leopardus wiedii Zfy gene, intron.
341671839885 0.992Oncifelis geoffroyi TTR gene, partial sequence.
3760661817817 1.000Leopardus wiedii CALB gene, partial sequence.
3818661326326 1.000Leopardus tigrinus CHRNA1 gene, partial sequence.
391966113651368 0.999Oncifelis guigna CLU gene, partial sequence.
4020661518518 1.000Oncifelis colocolo CMA1 (CMA1) gene, partial cds.
4121661703703 1.000Oncifelis guigna DGKG2 gene, partial sequence.
4222661412412 1.000Oncifelis geoffroyi FES gene, partial sequence.
4323661440445 0.991Leopardus wiedii GATA3 gene, partial sequence.
4424661670670 1.000Leopardus tigrinus GHR (GHR) gene, partial cds.
4525661622622 1.000Leopardus tigrinus GNAZ (GNAZ) gene, partial cds.
4661661670673 0.999Leopardus tigrinus GNB1 gene, partial sequence.
4726661340349 0.996Leopardus tigrinus HK1 gene, partial sequence.
4827661296296 1.000Oncifelis guigna NCL (NCL) gene, partial cds.
4928661290290 1.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
5030661551551 1.000Oncifelis geoffroyi RSA2 gene, partial sequence.
5131661371372 0.998Leopardus tigrinus SIL gene, partial sequence.
5232661595595 1.000Oncifelis guigna TCP1 (TCP1) gene, partial cds.
5333661512513 1.000Leopardus wiedii ALAS gene, partial sequence.
5434661670670 1.000Leopardus tigrinus ATP-7A (ATP7A) gene, partial cds.
5535661318318 1.000Leopardus tigrinus IL2RG (IL2RG) gene, partial cds.
5636661898899 1.000Oncifelis geoffroyi PLP gene, partial sequence.
5737551844844 1.000Oncifelis colocolo isolate Lco6 ZFX gene, intron.
583866127282745 0.997Leopardus wiedii sex-determining region Y protein (SRY) gene, complete cds.
68111441398410 0.990Leopardus geoffroyi UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
69112441636904 0.896Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
7011871341159567 0.879Leopardus tigrinus isolate bLti58 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
716477164229 0.870Leopardus geoffroyi isolate bLge37 ATPase 8 gene, complete cds; and ATPase 6 gene, partial cds; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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