Cluster set at subtree whose root is Leopardus (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01011111881188 1.000Leopardus pardalis IRBP gene for interphotorecepter retinoid binding protein, partial cds, isolate: HS1229.
1851217741095 0.853Leopardus pardalis RAG1 gene, partial cds, isolate: HS1229.
279121933963 0.984Leopardus pardalis APOB gene for apolipoprotein B, partial cds, isolate: HS1229.
38611110431043 1.000Leopardus pardalis brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1229.
48711111911191 1.000Leopardus pardalis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1229.
50791282381 0.928Oncifelis geoffroyi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
64341721235238 0.999Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0313 allele, exon 2 and partial cds.
7885163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
873641190215 0.987Leopardus wiedii isolate Lwi63 control region, partial sequence; mitochondrial.
94510111551181 0.996Leopardus pardalis strain LpaX zinc finger protein Zfx (Zfx) gene, partial cds.
108111102102 1.000Leopardus pardalis cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.
1189351187187 1.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*10 allele, exon 2 and partial cds.
1290351218218 1.000Oncifelis geoffroyi MHC class I antigen (FLA-Z) gene, FLA-Z*8 allele, exon 3 and partial cds.
1391111817817 1.000Leopardus pardalis 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
1478111321321 1.000Leopardus pardalis adenosine A3 receptor (ADORA3) gene, partial cds.
1592111826826 1.000Leopardus pardalis beta-2 adrenergic receptor (ADRB2) gene, partial cds.
1617671640641 0.999Leopardus pardalis amyloid beta precursor protein (APP) gene, partial cds.
1793111675675 1.000Leopardus pardalis ATP7A (ATP7A) gene, partial cds.
1880121557558 0.999Leopardus pardalis brain-derived neurotrophic factor (BDNF) gene, partial cds.
1994111311311 1.000Leopardus pardalis BMI1 (BMI1) gene, 3' UTR.
2095111990990 1.000Leopardus pardalis cannabinoid receptor 1 (CNR1) gene, partial cds.
2196111405405 1.000Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.
2297111975975 1.000Leopardus pardalis EDG1 (EDG1) gene, partial cds.
2398111317317 1.000Leopardus pardalis phospholipase C beta 4 (PLCB4) gene, 3' UTR.
2499111285285 1.000Leopardus pardalis prepronociceptin (PNOC) gene, partial cds.
2529671423473 0.985Leopardus tigrinus RAG2 (RAG2) gene, partial cds.
26100111426426 1.000Leopardus pardalis tyrosinase (TYR) gene, partial cds.
27101111204204 1.000Leopardus pardalis zinc finger protein ZFX (ZFX) gene, partial cds.
2810211110211021 1.000Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
29103221900904 0.998Oncifelis geoffroyi Hox8 early enhancer sequence.
3013661791842 0.987Leopardus wiedii Smcy gene, intron 4, complete sequence.
3114661959961 0.999Oncifelis guigna Ube1y gene, exon 18 and partial cds.
3215661725729 0.998Leopardus wiedii Zfy gene, intron.
3359111567567 1.000Leopardus pardalis isolate 8 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
341671839885 0.992Oncifelis geoffroyi TTR gene, partial sequence.
3516111435435 1.000Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
3656111373373 1.000Leopardus pardalis mitochondrial gene for 12S rRNA, partial sequence.
3760661817817 1.000Leopardus wiedii CALB gene, partial sequence.
3818661326326 1.000Leopardus tigrinus CHRNA1 gene, partial sequence.
391966113651368 0.999Oncifelis guigna CLU gene, partial sequence.
4020661518518 1.000Oncifelis colocolo CMA1 (CMA1) gene, partial cds.
4121661703703 1.000Oncifelis guigna DGKG2 gene, partial sequence.
4222661412412 1.000Oncifelis geoffroyi FES gene, partial sequence.
4323661440445 0.991Leopardus wiedii GATA3 gene, partial sequence.
4424661670670 1.000Leopardus tigrinus GHR (GHR) gene, partial cds.
4525661622622 1.000Leopardus tigrinus GNAZ (GNAZ) gene, partial cds.
4661661670673 0.999Leopardus tigrinus GNB1 gene, partial sequence.
4726661340349 0.996Leopardus tigrinus HK1 gene, partial sequence.
4827661296296 1.000Oncifelis guigna NCL (NCL) gene, partial cds.
4928661290290 1.000Leopardus tigrinus PNOC (PNOC) gene, partial cds.
5030661551551 1.000Oncifelis geoffroyi RSA2 gene, partial sequence.
5131661371372 0.998Leopardus tigrinus SIL gene, partial sequence.
5232661595595 1.000Oncifelis guigna TCP1 (TCP1) gene, partial cds.
5333661512513 1.000Leopardus wiedii ALAS gene, partial sequence.
5434661670670 1.000Leopardus tigrinus ATP-7A (ATP7A) gene, partial cds.
5535661318318 1.000Leopardus tigrinus IL2RG (IL2RG) gene, partial cds.
5636661898899 1.000Oncifelis geoffroyi PLP gene, partial sequence.
5737551844844 1.000Oncifelis colocolo isolate Lco6 ZFX gene, intron.
583866127282745 0.997Leopardus wiedii sex-determining region Y protein (SRY) gene, complete cds.
591041316363 1.000Leopardus pardalis clone BCD cytochrome b gene, partial cds; mitochondrial.
608331165300 0.700Leopardus tigrinus isolate Lt cytochrome b gene, partial cds; mitochondrial.
6181111677677 1.000Leopardus pardalis FBN1 gene, partial sequence.
62105111291291 1.000Leopardus pardalis protein tyrosine phosphatase receptor type G (PTPRG) gene, partial cds.
638322163406480 0.989Leopardus pardalis clone LPA1 carboxylesterase 7-like gene, complete sequence.
64106121642723 0.944Leopardus pardalis isolate AZ D-loop, partial sequence; mitochondrial.
6510711123102310 1.000Leopardus pardalis transferrin receptor protein 1 (TFRC) mRNA, complete cds.
6610814110381038 1.000Leopardus pardalis clone LPAI69K major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.
6710911110621062 1.000Felis pardalis 12S ribosomal RNA gene, partial sequence, tRNA Val gene, complete sequence and 16S ribosomal RNA gene, partial sequence, mitochondrial genes encoding mitochondrial RNAs.
68111441398410 0.990Leopardus geoffroyi UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
69112441636904 0.896Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
7011871341159567 0.879Leopardus tigrinus isolate bLti58 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
716477164229 0.870Leopardus geoffroyi isolate bLge37 ATPase 8 gene, complete cds; and ATPase 6 gene, partial cds; mitochondrial.
72123111786786 1.000Leopardus wiedii isolate LW37 prion protein (PRNP) gene, complete cds.
7372461438461 0.971Leopardus colocolo haplotype A21 control region, partial sequence; mitochondrial.
74121141395395 1.000Leopardus pardalis albescens haplotype 4 control region, partial sequence; mitochondrial.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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