Cluster set at subtree whose root is Musa acuminata (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
06661358358 1.000Musa acuminata subsp. siamea chloroplast DNA, tRNA-Leu, trnL-F intergenic spacer region, tRNA-Phe, partial and complete sequence.
173111249249 1.000Musa acuminata subsp. zebrina MSAP-RGA gene, partial cds.
223151544544 1.000Musa acuminata subsp. zebrina endogenous virus badnavirus clone Zeb15 ORFIII-like polyprotein gene, partial cds.
33661777812 0.978Musa acuminata subsp. burmannica atpB-rbcL intergenic spacer, partial sequence; chloroplast.
4481111583677 0.875Musa acuminata subsp. microcarpa 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence; chloroplast.
55661781820 0.971Musa acuminata subsp. zebrina ribosomal protein S16 (rps16) gene, intron; chloroplast.
669131674933 0.850Musa acuminata subsp. errans tRNA-Leu (trnL(UAA)) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF(GAA)) gene, partial sequence; chloroplast.
71052318311503 0.621Musa acuminata subsp. malaccensis bio-material CIRAD:Guadeloupe NEU0013 trnK gene, partial sequence; and maturase K (matK) gene, partial cds; chloroplast.
840221163163 1.000Musa acuminata subsp. burmannica microsatellite Mbg01 sequence.
941221122125 0.988Musa acuminata subsp. burmannica microsatellite Mbg04 sequence.
1042221125128 0.988Musa acuminata subsp. zebrina microsatellite Mbg06 sequence.
1143221249249 1.000Musa acuminata subsp. burmannica microsatellite Mbg11 sequence.
12442218921089 0.910Musa acuminata subsp. zebrina ATP:citrate lyase gene, partial cds.
1345221779779 1.000Musa acuminata subsp. zebrina stomatal cytokinesis defective protein gene, partial cds.
144622110131014 1.000Musa acuminata subsp. zebrina electron transport protein gene, partial cds.
1547221529529 1.000Musa acuminata subsp. zebrina non-phototropic hypocotyl 3-like gene, partial sequence.
1648221891891 1.000Musa acuminata subsp. zebrina endoribonuclease dicer protein-like gene, partial sequence.
1749221888888 1.000Musa acuminata subsp. zebrina CASP protein-like gene, partial sequence.
1850221914914 1.000Musa acuminata subsp. zebrina zeaxanthin epoxidase gene, partial cds.
1951221497503 0.994Musa acuminata subsp. zebrina Na/H antiporter gene, partial cds.
205222110621072 0.995Musa acuminata subsp. zebrina DUF89 family protein gene, partial cds.
215322111741174 1.000Musa acuminata subsp. zebrina TCP-1-eta subunit gene, partial cds.
2254221841841 1.000Musa acuminata subsp. zebrina NAD+ synthase domain protein gene, partial cds.
2355221907907 1.000Musa acuminata subsp. zebrina ribosomal s6 RPS6-2 family protein gene, partial cds.
245622115961599 0.999Musa acuminata subsp. zebrina mRNA capping enzyme large subunit family protein gene, partial cds.
2557221786786 1.000Musa acuminata subsp. zebrina methylcrotonyl-CoA carboxylase beta chain gene, partial cds.
2658221799799 1.000Musa acuminata subsp. zebrina annexin-like protein gene, partial cds.
2759221673674 0.999Musa acuminata subsp. zebrina succinoaminoimidazole-carboximide ribonucleotide synthetase family protein gene, partial cds.
2860221784788 0.998Musa acuminata subsp. zebrina methionine aminopeptidase 1-like gene, partial sequence.
296122110061006 1.000Musa acuminata subsp. zebrina initiation factor 2B family protein gene, partial cds.
3062221854854 1.000Musa acuminata subsp. zebrina DNA polymerase delta catalytic subunit gene, partial cds.
31632419941428 0.888Musa acuminata chloroplast gene homologous to rbcL gene.
3216451365494 0.791Musa acuminata subsp. zebrina DNA for repetitive element Brep 1.
3307441423687 0.757Musa acuminata subsp. malaccensis partial nbs gene for NBS-LRR disease resistance protein, clone N271_ML.
346735110731073 1.000Musa acuminata subsp. siamea voucher TM051 ribosomal protein 16 (rpl16) gene, partial cds; chloroplast.
3568351949972 0.995Musa acuminata subsp. malaccensis voucher TM68 photosystem I P700 apoprotein A1 (psaA) gene, partial cds; psaA-ycf3 intergenic spacer, complete sequence; and photosystem I assembly protein (ycf3) gene, partial cds; chloroplast.
366935111601180 0.987Musa acuminata subsp. malaccensis voucher TM68 NADH dehydrogenase subunit 1 (ndhA) gene, partial cds; chloroplast.
377035122672300 0.990Musa acuminata subsp. siamea voucher TM91 (KU) cytochrome f (petA) gene, partial cds; petA-psbJ intergenic spacer, complete sequence; photosystem II protein J (psbJ) gene, complete cds; psbJ-psbL intergenic spacer, complete sequence; photosystem II protein L (psbL) gene, complete cds; psbL-psbF intergenic spacer, complete sequence; and cytochrome b559 beta chain (psbF) gene, partial cds; chloroplast.
382111544544 1.000Musa acuminata subsp. siamea endogenous virus badnavirus clone AA173-3 ORFIII-like polyprotein gene, partial cds.
3974391191192 0.998Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone W14a.
40753815861051 0.899Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone SY30A.
4176110110831096 0.998Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyRT1.
42331241724794 0.957Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyLTR8.
43771121330330 1.000Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rMAcoRT1.1.
4435181217671 0.591Musa acuminata subsp. malaccensis MuTR repeat element, clone Mal-TR3a.
45781111262478 0.761Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone Mal-coTR5a.
4679111323323 1.000Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone Mal-coTR3c.
4780121533536 0.997Musa acuminata subsp. malaccensis clone MCL-5 CLV1-like LRR receptor kinase (CLAVATA1) mRNA, partial cds.
488111111581158 1.000Musa acuminata subsp. malaccensis resistance protein gene, partial cds.
498211111651165 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC1) gene, partial cds.
508311110971097 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC2) gene, partial cds.
51843318241192 0.867Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC3) gene, partial cds.
528511112031203 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC4) gene, partial cds.
538611111501150 1.000Musa acuminata subsp. malaccensis resistance gene candidate NBS-type protein (RGC5) gene, partial cds.
548711136993699 1.000Musa acuminata subsp. malaccensis NBS-type resistance protein RGC2 (RGC2) mRNA, complete cds.
558811143294329 1.000Musa acuminata subsp. malaccensis NBS-type resistance protein RGC5 (RGC5) mRNA, complete cds.
5614191605611 0.993Musa acuminata subsp. malaccensis partial argonaute gene for AGO PIWI domain protein, exon 1, clone MAL-AGO2.
5789241668674 0.994Musa acuminata subsp. malaccensis isolate LYB7F10 lycopene beta cyclase (LYB7) gene, partial cds.
5890261191460 0.704Musa acuminata subsp. malaccensis isolate PSY11F6 phytoene synthase (PSY11) gene, partial sequence.
5991111674674 1.000Musa acuminata subsp. malaccensis isolate YX-06 resistance protein gene, partial cds.
6092111651651 1.000Musa acuminata subsp. malaccensis isolate YX-11 resistance protein gene, partial cds.
612121544544 1.000Musa acuminata subsp. malaccensis endogenous virus badnavirus clone AA207-6 ORFIII-like polyprotein gene, partial cds.
6293111523523 1.000M.acuminata repetitve DNA.
63143241861867 0.997Musa sp. L83 partial cf-2/CF-5 gene for putative Cf2/Cf5-like disease resistance protein, clone L83.
6437111537537 1.000Musa acuminata subsp. errans partial nbs gene for NBS-LRR disease resistance protein, cultivar Agutay, clone N204_ER.
65192111713713 1.000Musa acuminata AAAA Group cultivar FHIA-02 beta-1,3-glucanase (Glu) gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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