Cluster set at subtree whose root is Neocallimastigomycota (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
7-92434462338 0.489N.patriciarum mRNA for xylanase A.
9-611313491925 0.845Neocallimastix patriciarum cellobiohydrolase precursor (celA) mRNA, complete cds.
10-2212606208822 0.665Anaeromyces sp. NFRI-14 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
14-132156661783 0.813Cyllamyces aberensis isolate AFTOL-ID 846 18S small subunit ribosomal RNA gene, partial sequence.
20-472495751 0.869Neocallimastix sp. YQ1 18S ribosomal RNA gene, partial sequence.
48-49595667798 0.959Piromyces sp. 8 GRL-9 large subunit ribosomal RNA gene, partial sequence.
49-14143482515 0.961Orpinomyces sp. ZU1 18S ribosomal RNA (SSU) gene, partial sequence.
50-67310865502 0.438Piromyces equi mRNA for endoglucanase 5A (cel5A).
54-5947071405 0.708Neocallimastix patriciarum beta-1,3-1,4 glucanase A16 mRNA, complete cds.
61-45214221966 0.865Orpinomyces joyonii cellulase (celB29) mRNA, complete cds.
80-46212101920 0.890Piromyces sp. E2 exoglucanase Cel6A (cel6A) gene, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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