Cluster set at subtree whose root is Neocallimastigomycota (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-111886886 1.000Neocallimastix frontalis iron hydrogenase precursor (hyd) mRNA, partial cds; nuclear gene for hydrogenosomal product.
1-25213372467 0.761Neocallimastix frontalis hydrogenase (HydL2) mRNA, complete cds.
2-221957957 1.000Neocallimastix patriciarum acetylxylan esterase (estw1-6) gene, partial cds.
3-262547696 0.909Neocallimastix frontalis mRNA for hydrogenosomal adenylate kinase hdgAKL2.2, partial.
4-2419741115 0.931Neocallimastix patriciarum ADP/ATP carrier (AAC) mRNA, complete cds; nuclear gene for hydrogenosomal product.
5-111778778 1.000Neocallimastix frontalis heat shock protein 60 (HSP60.1) mRNA, partial cds.
6-3327782071 0.674Neocallimastix patriciarum heat shock protein 60 precursor (Hsp60) mRNA, complete cds.
7-92434462338 0.489N.patriciarum mRNA for xylanase A.
8-2419931278 0.873Neocallimastix patriciarum succinyl-CoA synthetase, alpha subunit (scsA) mRNA, complete cds.
9-611313491925 0.845Neocallimastix patriciarum cellobiohydrolase precursor (celA) mRNA, complete cds.
10-2212606208822 0.665Anaeromyces sp. NFRI-14 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
11-25224152803 0.914Neocallimastix frontalis pyruvate formate lyase mRNA, partial cds.
12-1217981216 0.828Neocallimastix frontalis pyruvate formate lyase activating enzyme mRNA, complete cds.
13-11111531153 1.000Neocallimastix frontalis mitochondrial ornithine carbamoyltransferase mRNA, complete cds; nuclear gene for mitochondrial product.
14-132156661783 0.813Cyllamyces aberensis isolate AFTOL-ID 846 18S small subunit ribosomal RNA gene, partial sequence.
15-22124403962 0.808Neocallimastix frontalis RNA polymerase II largest subunit (RPB1) gene, partial cds.
16-12133023386 0.988Neocallimastix frontalis RNA polymerase II second largest subunit (RPB2) gene, RPB2-2 allele, partial cds.
17-111342342 1.000Neocallimastix frontalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
18-111360360 1.000Neocallimastix frontalis strain YAK11 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence.
19-111398398 1.000Neocallimastix frontalis strain YAK11 internal transcribed spacer 1, partial sequence.
20-472495751 0.869Neocallimastix sp. YQ1 18S ribosomal RNA gene, partial sequence.
21-14113651392 0.990Neocallimastix frontalis strain PMA02 hexokinase 4 (HEX4) mRNA, complete cds.
22-12116801701 0.994Neocallimastix frontalis strain PMA02 Glucose-6-phosphate isomerase 2 (GPI2) mRNA, complete cds.
23-12129533012 0.990Neocallimastix frontalis strain PMA02 phosphofructokinase alpha subunit (PFK1) mRNA, partial cds.
24-12110771077 1.000Neocallimastix frontalis strain PMA02 fructose-bisphosphate aldolase (FBA2) mRNA, complete cds.
25-121744747 0.998Neocallimastix frontalis strain PMA02 triose phosphate isomerase (TPI1) mRNA, complete cds.
26-1219991005 0.997Neocallimastix frontalis strain PMA02 glyceraldehyde-3-phosphate dehydrogenase (GAP1) mRNA, partial cds.
27-12112571262 0.998Neocallimastix frontalis strain PMA02 phosphoglycerate kinase (PGK1) mRNA, complete cds.
28-12115331533 1.000Neocallimastix frontalis strain PMA02 phosphoglycerate mutase (PGM2) mRNA, complete cds.
29-13113111968 0.777N.frontalis enolase gene.
30-13114131803 0.897Neocallimastix frontalis strain PMA02 pyruvate kinase (PK1) mRNA, complete cds.
31-111589589 1.000Neocallimastix frontalis strain PMA02 pyruvate kinase (PK4) mRNA, partial cds.
32-111657657 1.000Neocallimastix frontalis strain PMA02 pyruvate kinase (PK5) mRNA, partial cds.
33-111697697 1.000UNVERIFIED: Neocallimastix frontalis strain PMA02 D-Lactate dehydrogenase-like (LDH) mRNA, complete sequence.
34-24224283024 0.890Piromyces sp. E2 aldehyde/alcohol dehydrogenase (adhE) mRNA, complete cds.
35-11115141514 1.000Neocallimastix frontalis strain PMA02 aldehyde-alcohol dehydrogenase (ACDH3) mRNA, partial cds.
36-11110231023 1.000Neocallimastix frontalis strain PMA02 alcohol dehydrogenase (ADH) mRNA, complete cds.
37-13118272052 0.934N.frontalis phosphoenolpyruvate carboxykinase (pepck) mRNA, complete cds.
38-2329481230 0.848Piromyces sp. E2 mRNA for malate dehydrogenase.
39-121948948 1.000Neocallimastix frontalis strain PMA02 malate dehydrogenase (MDH4) mRNA, complete cds.
40-111972972 1.000Neocallimastix frontalis strain PMA02 fumarate reductase (FMR) mRNA, partial cds.
41-24110171555 0.813Neocallimastix patriciarum succinyl-CoA synthetase, beta subunit (scsB) mRNA, complete cds.
42-2328621233 0.831Neocallimastix frontalis strain PMA02 isocitrate dehydrogenase (IDH1) mRNA, complete cds.
43-23219902650 0.869Piromyces sp. E2 mRNA for aconitate hydratase.
44-11121182118 1.000Neocallimastix frontalis strain PMA02 aconitate hydratase (AH3) mRNA, partial cds.
45-14111941254 0.987Neocallimastix frontalis strain PMA02 homocitrate synthase (HCS3) mRNA, complete cds.
46-16117792344 0.799Neocallimastix frontalis malic enzyme precursor mRNA, complete cds.
47-11114191419 1.000Neocallimastix frontalis strain PMA02 adeylate kinase (AK) mRNA, partial cds.
48-49595667798 0.959Piromyces sp. 8 GRL-9 large subunit ribosomal RNA gene, partial sequence.
49-14143482515 0.961Orpinomyces sp. ZU1 18S ribosomal RNA (SSU) gene, partial sequence.
50-67310865502 0.438Piromyces equi mRNA for endoglucanase 5A (cel5A).
51-11118381838 1.000N.frontalis enolase gene, promotor region.
52-222675969 0.848N.frontalis mRNA for endoxylanase.
53-11114181418 1.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynS20) mRNA, complete cds.
54-5947071405 0.708Neocallimastix patriciarum beta-1,3-1,4 glucanase A16 mRNA, complete cds.
55-11124212421 1.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynS20E) mRNA, complete cds.
56-11123312331 1.000Neocallimastix patriciarum strain W5 beta-glucosidase (BGS) mRNA, complete cds.
57-11128192819 1.000xynB=Xylanase B [Neocallimastix patriciarum, mRNA, 2819 nt].
58-11115411541 1.000Neocallimastix patriciarum acetylxylan esterase (bnaI) mRNA, complete cds.
59-11111781178 1.000Neocallimastix patriciarum acetylxylan esterase (bnaII) mRNA, partial cds.
60-11113751375 1.000Neocallimastix patriciarum acetylxylan esterase (bnaIII) mRNA, complete cds.
61-45214221966 0.865Orpinomyces joyonii cellulase (celB29) mRNA, complete cds.
62-11120562056 1.000Neocallimastix patriciarum endo-1,4-beta-xylanase (xynC) gene, complete cds.
63-11123212321 1.000Neocallimastix patriciarum heat shock protein 70 precursor (Hsp70) mRNA, complete cds.
64-111272272 1.000Neocallimastix LM-2 DNA AT-rich region.
65-33332304868 0.779Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1.
66-11111781178 1.000Neocallimastix sp. GE13 isolate AFTOL-ID 638 elongation factor 1-alpha (EF1-alpha) gene, partial cds.
67-111340340 1.000Neocallimastix sp. G-1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, region.
68-111431431 1.000Neocallimastix sp. CF 17 18S ribosomal RNA gene, partial sequence.
69-13118622336 0.887Piromyces sp. mRNA for mannanase A.
70-11125382538 1.000Piromyces sp. mRNA for xylanase A.
71-35213441722 0.918Piromyces rhizinflata exocellobiohydrolase precursor Cbh6 (cbh6) mRNA, complete cds.
72-33111421610 0.900Piromyces sp. BTrP1 1,4-beta-glucanase (Cel6G) mRNA, partial cds.
73-11115941594 1.000Piromyces rhizinflata exocellobiohydrolase precursor (chb29) mRNA, complete cds.
74-11115041504 1.000Piromyces rhizinflata exocellobiohydrolase Cbh120 (cbh120) mRNA, complete cds.
75-22126662742 0.986Piromyces sp. E2 cellulase Cel48A precursor (cel48A) mRNA, complete cds.
76-12127462804 0.990Piromyces sp. E2 cellulase Cel9A precursor (cel9A) mRNA, complete cds.
77-24223063242 0.794Piromyces sp. E2 clone lambda11 beta-glucosidase Cel1C gene, complete cds.
78-11112181218 1.000Piromyces sp. E2 clone lambda11 beta-glucosidase Cel1D gene, partial cds.
79-11117081708 1.000Piromyces sp. E2 clone 64 mannanase ManA and mannanase ManB genes, partial cds.
80-46212101920 0.890Piromyces sp. E2 exoglucanase Cel6A (cel6A) gene, complete cds.
81-111860860 1.000Piromyces sp. E2 clone 25 cel6B-cel6C non-coding intergenic region.
82-11117481748 1.000Piromyces sp. E2 clone 25 cellobiohydrolase Cel6C gene, partial cds.
83-111420420 1.000Piromyces sp. E2 clone 31 feruloyl esterase FaeA gene, partial cds.
84-11116771677 1.000Piromyces sp. E2 clone 29 beta-glucosidase family 3 protein Cel3A gene, partial cds.
85-11125852585 1.000Piromyces sp. E2 cellulosomal glycoside hydrolase family 9 endoglucanase Cel9B gene, partial cds.
86-111400400 1.000Piromyces sp. E2 clone 31 feruloyl esterase FaeA gene, 3' UTR and non-coding intergenic region.
87-111328328 1.000Piromyces sp. E2 mRNA for putative alcohol dehydrogenase/acetaldehyde dehydrogenase, partial 328 BP.
88-111285285 1.000Piromyces sp. E2 mRNA for putative alcohol dehydrogenase/acetaldehyde dehydrogenase, partial 285 BP.
89-11110451045 1.000Piromyces sp. E2 hsp70.1 gene for putative heat shock protein 70, partial.
90-11110481048 1.000Piromyces sp. E2 hsp70.2 gene for putative heat shock protein 70, partial.
91-22213141669 0.894Piromyces sp. E2 mRNA for xylose isomerase (xylA gene).
92-11120412041 1.000Piromyces sp. E2 mRNA for D-xylulokinase (xylB gene).
93-111295295 1.000Piromyces sp. E2 cellulosomal glycoside hydrolase family 6 exoglucanase Cel6E (cel6E) gene, partial cds.
94-11127372737 1.000Piromyces sp. E2 beta-glucosidase precursor (cel3A) mRNA, complete cds.
95-11116271627 1.000Piromyces sp. E2 cellulosomal serpin precursor (celpin) mRNA, complete cds.
96-11115951595 1.000Piromyces sp. E2 cellulosomal serpin precursor (celpin) gene, partial cds.
97-121600604 0.997Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pd6.
98-121139166 0.919Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh104.
99-121522534 0.989Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pc7.
100-111351351 1.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh114.
101-11113231323 1.000Piromyces sp. E2 mRNA for ketol-acid reductoisomerase.
102-111359359 1.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh112.
103-111344344 1.000Piromyces sp. E2 mRNA for formate C-acetyltransferase, clone pPFLh140.
104-111355355 1.000Piromyces sp. E2 mRNA for glyceraldehyde 3-phosphate dehydrogenase (GAPDH), partial.
105-111318318 1.000Piromyces sp. E2 mRNA for BGP-independent phosphoglyceromutase, partial.
106-111328328 1.000Piromyces sp. E2 mRNA for hexokinase, partial.
107-111306306 1.000Piromyces sp. E2 mRNA for 6-phosphofructokinase, partial.
108-111260260 1.000Piromyces sp. E2 mRNA for phosphoglycerate kinase, partial.
109-11124382438 1.000Piromyces sp. E2 heat shock protein 60 (E2HSP60.1) mRNA, complete cds.
110-11114181418 1.000Piromyces equi mRNA for endoglucanase 45A (cel45A).
111-11116461646 1.000Piromyces equi non-catalytic protein 1 (ncp1) mRNA, complete cds.
112-11120402040 1.000Piromyces equi cinnamoyl ester hydrolase EstA (estA) mRNA, complete cds.
113-221287427 0.836Piromyces sp. AF-CTS-BBP1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, region.
114-221334463 0.861Caecomyces sp. AF-CTS-EMCe1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, region.
115-111691691 1.000Caecomyces communis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
116-11133753375 1.000Orpinomyces joyonii endoglucanase precursor (CelA) gene, complete cds.
117-1217081031 0.843Orpinomyces sp. PC-2 cyclophilin B precursor (CyPB) gene, complete cds.
118-11115851585 1.000Orpinomyces sp. PC-2 1,4-beta-D-glucan-cellobiohydrolase (celD) mRNA, complete cds.
119-111765765 1.000Orpinomyces sp. PC-2 1,4-beta-D-glucan-cellobiohydrolase (celG) mRNA, partial cds.
120-11110671067 1.000Orpinomyces sp. PC-2 acetyl xylan esterase A (AxeA) mRNA, complete cds.
121-11116451645 1.000Orpinomyces sp. PC-2 feruloyl esterase A (faeA) mRNA, partial cds.
122-11119241924 1.000Orpinomyces sp. PC-2 mannanase ManA (manA) mRNA, complete cds.
123-111853853 1.000Orpinomyces sp. PC-2 endo-glucanase CelJ (celJ) mRNA, complete cds.
124-111248248 1.000Orpinomyces sp. OUS1 partial dyn1 gene for putative dynein heavy chain.
125-111240240 1.000Orpinomyces sp. OUS1 partial pfl1 gene for putative formate acetyltransferase.
126-111466466 1.000Orpinomyces sp. OUS1 partial xynY gene for putative endo-1,4-beta-xylanase Y precursor.
127-111376376 1.000Orpinomyces sp. OUS1 partial gpt1 gene for putative UDP-glucose:glycoprotein glucosyltransferase 2 precursor, exons 1-2.
128-111143143 1.000Orpinomyces sp. OUS1 partial mnn2 gene for putative UDP-N-acetylglucosamine transporter, exon 1.
129-11120252025 1.000Orpinomyces sp. OUS1 partial mdh1 gene for putative malate dehydrogenase, exons 1-5.
130-111575575 1.000Orpinomyces sp. OUS1 partial nic96 gene for putative nuclear pore protein.
131-111128128 1.000Orpinomyces sp. OUS1 partial abcT3 gene for putative ABC transporter proteins.
132-11116711671 1.000Orpinomyces sp. OUS1 partial pepD2 gene for putative aminoacyl-histidine dipeptidase.
133-11111411141 1.000Orpinomyces sp. OUS1 partial azr1 gene for putative 5-azacytidine resistance protein.
134-111609609 1.000Orpinomyces sp. OUS1 partial xynB gene for putative xylanase B.
135-141588609 0.987Orpinomyces sp. OUS1 partial IGS and partial 18S rRNA gene, clone E2-31 (T7).
136-111210210 1.000Orpinomyces sp. OUS1 partial 18S rRNA gene, clone E2-31 (SP6).
137-11135263526 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-53.
138-111277277 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-16.
139-111233233 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-21.
140-111534534 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E4-17.
141-111488488 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-1, 5' end.
142-111476476 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-1, 3' end.
143-111259259 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-77.
144-111315315 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-39.
145-111163163 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-37.
146-111180180 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V1-10.
147-111353353 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-40, 5' end.
148-111330330 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-40, 3' end.
149-121546586 0.966Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E1-10, 5' end.
150-121589608 0.984Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E1-10, 3' end.
151-111399399 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E2-31-2.
152-111934934 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone V3-7.
153-111159159 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-4.
154-111197197 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-5.
155-111145145 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-6.
156-111239239 1.000Orpinomyces sp. OUS1 partial ORF for hypothetical protein, clone E3-27-1.
157-11115371537 1.000Orpinomyces sp. OUS1 partial putative corrupted gypsy-like retrotransposon, exons 1-6, clone E2-58.
158-111309309 1.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone V1-22.
159-11124062406 1.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone E2-13.
160-121281281 1.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, clone E1-1.
161-121575605 0.975Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone V2-9.
162-111473473 1.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E4-2.
163-1218931094 0.908Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E2-50.
164-11113311331 1.000Orpinomyces sp. OUS1 partial putative gypsy-like retrotransposon, exon 1, clone E2-101.
165-222297319 0.966Anaeromyces sp. GA-01-CIRG 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
166-111277277 1.000Orpinomyces sp. GO 02 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
167-111456456 1.000Orpinomyces sp. FCT 2 1,4-beta-D-glucan-4-glucanohydrolase (celE) mRNA, partial cds.
168-111304304 1.000Orpinomyces sp. B SSD-2011 strain NDRI8 28S large subunit ribosomal RNA gene, partial sequence.
169-11117951795 1.000Anaeromyces sp. W-98 cellulase (celA) mRNA, complete cds.
170-111249249 1.000Orpinomyces sp. C CRL-6 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
171-111306306 1.000Anaeromyces sp. GA 03 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
172-111828828 1.000Anaeromyces mucronatus strain YE505 Fae1A (fae1A) mRNA, complete cds.
173-11721721 1.000Neocallimastigomycota sp. LLMB10_1 PML-2011w 28S ribosomal RNA gene, partial sequence.
174-11897897 1.000Neocallimastigomycota sp. LLME10_2 PML-2011x 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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