Cluster set at subtree whose root is Pelomedusidae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
083171192656855 0.954Pelusios castanoides mitochondrial ND4 gene (partial), tRNA-His gene and tRNA-Leu gene (partial), specimen voucher MTD T 5497.
1845725931444 0.786Pelusios castanoides voucher MTD_T 5212 recombination activating protein 1 (Rag1) gene, partial cds.
2141810227001108 0.820Pelusios castaneus voucher MVZ250331 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
31219922298444 0.879Pelusios castaneus voucher MVZ250331 12S ribosomal RNA gene, partial sequence; mitochondrial.
413201332438892 0.830Pelusios sp. HBS-1996 cytochrome b gene, partial cds; mitochondrial.
5117622254365 0.877Pelusios marani voucher MTD:T:7293 oocyte maturation factor Mos (Cmos) gene, partial cds.
70178325381193 0.550Pelusios castaneus partial rag2 gene for recombination activating gene 2, specimen voucher MTD T 4249.
8513152650664 0.983Pelusios castanoides voucher REPT_D5946 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
1887482610718 0.946Pelusios gabonensis brain-derived neurotrophic factor (BDNF) gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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