Cluster set at subtree whose root is Pelomedusidae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
083171192656855 0.954Pelusios castanoides mitochondrial ND4 gene (partial), tRNA-His gene and tRNA-Leu gene (partial), specimen voucher MTD T 5497.
1845725931444 0.786Pelusios castanoides voucher MTD_T 5212 recombination activating protein 1 (Rag1) gene, partial cds.
2141810227001108 0.820Pelusios castaneus voucher MVZ250331 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
31219922298444 0.879Pelusios castaneus voucher MVZ250331 12S ribosomal RNA gene, partial sequence; mitochondrial.
413201332438892 0.830Pelusios sp. HBS-1996 cytochrome b gene, partial cds; mitochondrial.
5117622254365 0.877Pelusios marani voucher MTD:T:7293 oocyte maturation factor Mos (Cmos) gene, partial cds.
685111324324 1.000Pelusios sinuatus R35 gene intron, specimen voucher MTD T 5564.
70178325381193 0.550Pelusios castaneus partial rag2 gene for recombination activating gene 2, specimen voucher MTD T 4249.
8513152650664 0.983Pelusios castanoides voucher REPT_D5946 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
933252333566 0.826Pelusios sinnuatus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
1062172319447 0.959Pelusios sinnuatus cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
118423227902790 1.000Pelusios williamsi recombination activating gene 1 (RAG-1) gene, partial cds.
129011111201120 1.000Pelusios subniger alpha enolase mRNA, partial cds.
1391111909909 1.000Pelusios subniger dopamine receptor type 1b (dbdr) gene, partial cds.
1492111507507 1.000Pelusios subniger acetylcholinergic receptor M4 (acm4) gene, partial cds.
1593111751751 1.000Pelusios subniger dopamine receptor type 1a (dadr) gene, partial cds.
1694111523523 1.000Pelusios subniger transcription factor sox-9 (sox9) gene, partial cds.
1795111519519 1.000Pelusios subniger recombination-activating gene 1 (RAG1) gene, partial cds.
1887482610718 0.946Pelusios gabonensis brain-derived neurotrophic factor (BDNF) gene, partial cds.
1988222580580 1.000Pelusios gabonensis neurotrophin-3 (NT-3) gene, partial cds.
2089222440440 1.000Pelusios gabonensis proopiomelanocortin (POMC) mRNA, partial sequence.
219811111491149 1.000Pelusios castaneus myf-5 gene for myogenic factor 5, partial cds.
2299241144190 0.830Pelusios niger mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 5160a.
2310034195164 0.704Pelusios adansonii mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 6074.
24101241132149 0.918Pelusios niger mitochondrial partial cytb gene for cytochrome b, specimen voucher MTD T 5160c.
25102111255255 1.000Pelusios castaneus insulin-like growth factor 1 (IGF1) mRNA, partial cds.
26105111136136 1.000Pelusios adansonii R35 gene intron, specimen voucher MTD T 6074.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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