Cluster set at subtree whose root is unclassified eukaryotes (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-10110382781878 0.611Unidentified protist 56059 18S ribosomal RNA gene and internal transcribed spacer 1, partial sequence.
1-77511201318 0.898Telonema antarcticum partial tuba gene for alpha-tubulin, exons 1-2.
2-71158831430 0.866Tsukubamonas globosa mRNA for beta tubulin, partial cds, clone: 2.
3-11119491949 1.000Trimastix marina cytosolic heat shock protein 90 (HSP90) gene, partial cds.
4-22114032014 0.848Trimastix marina cytosolic heat shock protein 70 (HSP70) gene, partial cds.
5-11113301330 1.000Trimastix pyriformis ATCC50562 guanine deaminase-like protein mRNA, partial cds.
6-221608804 0.878Trimastix pyriformis ribosomal protein L7A mRNA, complete cds.
7-11515515 1.000Populus tremula x Populus tremuloides/Amanita muscaria mixed EST library EST clone 0004.
8-11530530 1.000Populus tremula x P. tremuloides/Amanita muscaria mixed EST library EST, clone ptamabc210001f10.
9-111678678 1.000Collodictyon triciliatum calpain mRNA, partial cds.
10-111665665 1.000Trimastix pyriformis Shwachman-Bodian-Diamond protein-like protein mRNA, partial cds.
11-11112711271 1.000Trimastix pyriformis translation elongation factor 1 alpha (EF-1alpha) gene, partial cds.
12-11122982298 1.000Trimastix pyriformis translation elongation factor 2 (EF-2) gene, partial cds.
13-111216216 1.000Trimastix pyriformis alpha amylase-like protein mRNA, partial cds.
14-111375375 1.000Trimastix pyriformis diaminopimelate decarboxylase-like protein mRNA, partial cds.
15-121537612 0.939Trimastix pyriformis beta xylosidase-like protein A mRNA, partial cds.
16-111696696 1.000Trimastix pyriformis glycerate dehydrogenase-like protein mRNA, partial cds.
17-11113711371 1.000Trimastix pyriformis hexokinase mRNA, partial cds.
18-11116471647 1.000Trimastix pyriformis glucose-6-phosphate isomerase (GPI) mRNA, partial cds.
19-111972972 1.000Trimastix pyriformis fructose-1,6-bisphopshate aldolase (FBA) mRNA, complete cds.
20-111771771 1.000Trimastix pyriformis triosephosphate isomerase (TPI) mRNA, complete cds.
21-11110561056 1.000Trimastix pyriformis glyceraldehyde-3-phopshate dehydrogenase (GAPDH3) mRNA, complete cds.
22-11112061206 1.000Trimastix pyriformis phosphoglycerate kinase (PGK) mRNA, complete cds.
23-11117041704 1.000Trimastix pyriformis 2,3-bisphosphoglycerate-independent phosphoglyerate mutase (iPGM) mRNA, complete cds.
24-11113231323 1.000Trimastix pyriformis enolase mRNA, complete cds.
25-11114821482 1.000Trimastix pyriformis pyruvate kinase (PK) mRNA, complete cds.
26-11126372637 1.000Trimastix pyriformis pyruvate phosphate dikinase (PPDK) mRNA, complete cds.
27-11125272527 1.000Trimastix pyriformis aconitase mRNA, complete cds.
28-11114281428 1.000Trimastix pyriformis glycine cleavage complex T protein mRNA, complete cds.
29-11111201120 1.000Trimastix pyriformis membrane carrier 3 mRNA, partial cds.
30-111891891 1.000Trimastix pyriformis membrane carrier 1 mRNA, complete cds.
31-11120342034 1.000Trimastix pyriformis chaperonin 60 mRNA, complete cds.
32-11117751775 1.000Trimastix pyriformis glycine cleavage system protein P1 mRNA, partial cds.
33-11117161716 1.000Trimastix pyriformis glycine cleavage system protein P2 mRNA, partial cds.
34-111609609 1.000Trimastix pyriformis glycine cleavage system protein H mRNA, complete cds.
35-11111941194 1.000Trimastix pyriformis lipoyltransferase mRNA, partial cds.
36-11117061706 1.000Trimastix pyriformis processing peptidase alpha subunit mRNA, complete cds.
37-11152245224 1.000Trimastix pyriformis pyruvate:ferredoxin oxidoreductase gene, complete cds.
38-11137793779 1.000Trimastix pyriformis pyridine nucleotide transhydrogenase beta-subunit mRNA, complete cds.
39-11110261026 1.000Trimastix pyriformis TOM40 mRNA, partial cds.
40-12113171622 0.906Trimastix pyriformis glycine cleavage system L-protein mRNA, complete cds.
41-12113171435 0.959Trimastix pyriformis Fe-hydrogenase 3 mRNA, complete cds.
42-111982982 1.000Trimastix pyriformis Fe-hydrogenase 2 mRNA, complete cds.
43-55416712145 0.831Palpitomonas bilix mRNA for 90 kDa heat shock protein, partial cds.
44-11126402640 1.000Trimastix pyriformis mRNA for squalene-tetrahymanol cyclase, complete cds.
45-111966966 1.000Breviata anathema chaperonin mRNA, partial cds.
46-61247961148 0.822Palpitomonas bilix mRNA for actin, partial cds, clone: clone 2.
47-33332194003 0.870Breviata anathema 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
48-111691691 1.000Breviata anathema vacuolar protein sorting protein 20 (VPS20) mRNA, complete cds.
49-111677677 1.000Breviata anathema vacuolar protein sorting protein 2 (VPS2) mRNA, complete cds.
50-11110941094 1.000Breviata anathema vacuolar protein sorting protein 28 (VPS28) mRNA, complete cds.
51-111773773 1.000Breviata anathema vacuolar protein sorting protein 32 (VPS32) mRNA, complete cds.
52-11111841184 1.000Breviata anathema vacuolar protein sorting protein 4 (VPS4) mRNA, complete cds.
53-11110391039 1.000Breviata anathema vacuolar protein sorting protein 31 (VPS31) mRNA, complete cds.
54-111637637 1.000Breviata anathema vacuolar protein sorting protein 46 (VPS46) mRNA, complete cds.
55-11158695869 1.000Breviata anathema DNA-dependent RNA polymerase II largest subunit (RPB1) gene, partial cds.
56-23114572120 0.862Mikrocytos mackini isolate 7713 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
57-111951951 1.000Mikrocytos roughleyi 18S ribosomal RNA gene, partial sequence.
58-221186207 0.949Unidentified microheliozoan polyubiquitin (pub) gene, partial cds.
59-11113421342 1.000Metromonas simplex strain HFCC68 28S ribosomal RNA gene, partial sequence.
60-11568568 1.000Eukaryote sp. CRIB-09 18S ribosomal RNA gene, partial sequence.
61-111523523 1.000Mikrocytos sp. DFO-2002 18S ribosomal RNA gene, partial sequence.
62-33482530 0.963Eukaryote sp. C61 partial 18S rRNA gene, isolate C61.
63-331476550 0.940Unicellular eukaryote sp. A10 18S ribosomal RNA gene, partial sequence.
64-11485485 1.000Unicellular eukaryote sp. A14 18S ribosomal RNA gene, partial sequence.
65-11567567 1.000Unicellular eukaryote sp. A17 18S ribosomal RNA gene, partial sequence.
66-33632717 0.942Unicellular eukaryote sp. A23 18S ribosomal RNA gene, partial sequence.
67-11112041204 1.000Telonema sp. YPF702 EF1a gene for elongation factor 1alpha, partial cds.
68-11122962296 1.000Palpitomonas bilix gene for eukaryotic translation elongation factor 2, partial cds.
69-12113861402 0.994Palpitomonas bilix mRNA for actin, partial cds, clone: clone 3.
70-11113081308 1.000Palpitomonas bilix EFL mRNA for elongation factor-like, partial cds.
71-1111111111 1.000Eukaryota sp. ATCC 50646 HSP90 gene, partial cds.
72-1115901590 1.000Eukaryota sp. ATCC 50646 18S ribosomal RNA gene, partial sequence.
73-2424499780 0.931Eukaryote SCGC AAA074-A06 16S ribosomal RNA gene, partial sequence; mitochondrial.
74-11654654 1.000Eukaryote SCGC AAA071-B09 16S ribosomal RNA gene, partial sequence; mitochondrial.
75-11323323 1.000Eukaryote SCGC AAA071-C04 18S ribosomal RNA gene, partial sequence.
76-1112711271 1.000Eukaryote SCGC AAA071-G20 18S ribosomal RNA gene, partial sequence.
77-11423423 1.000Eukaryote SCGC AAA071-N05 18S ribosomal RNA gene, partial sequence.
78-11838838 1.000Eukaryote SCGC AAA071-N15 18S ribosomal RNA gene, partial sequence.
79-11705705 1.000Eukaryote SCGC AAA071-N23 16S ribosomal RNA gene, partial sequence; mitochondrial.
80-11725725 1.000Eukaryote SCGC AAA071-P07 16S ribosomal RNA gene, partial sequence; mitochondrial.
81-6868374757 0.935Eukaryote SCGC AAA074-D10 16S ribosomal RNA gene, partial sequence; chloroplast.
82-11794794 1.000Eukaryote SCGC AAA074-E07 16S ribosomal RNA gene, partial sequence; chloroplast.
83-11119841984 1.000Tsukubamonas globosa gene for 18S ribosomal RNA, partial sequence.
84-11119571957 1.000Tsukubamonas globosa EF2 mRNA for elongation factor 2, partial cds.
85-111697697 1.000Subulatomonas tetraspora strain ATCC 50623 alpha-tubulin gene, partial cds.
86-11114701470 1.000Subulatomonas tetraspora strain ATCC 50623 actin gene, partial cds.
87-11263263 1.000Eukaryote SCGC AAA074-P13 18S ribosomal RNA gene, partial sequence.
88-11124782478 1.000Eukaryota sp. CCAP 1945/1 heat shock protein 90 (HSP90) gene, partial cds.
89-11122502250 1.000Eukaryota sp. CCAP 1945/1 cytosolic heat shock protein 90 mRNA, partial cds.
90-111594594 1.000Microheliella maris elongation factor-like protein mRNA, complete cds.
91-33582600 0.989Eukaryota sp. 1 RB-2011 voucher LF3BB5E11 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2-like gene, partial sequence; mitochondrial.
92-12655655 1.000Eukaryote XCL-2011 isolate F3-01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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