Cluster set at subtree whose root is Caesalpinioideae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
2-4506351524522377 0.536Cercidium andicola voucher R. Fortunato 7638 (BAB, BH) tRNA-Lys (trnK) gene, intron; and maturase K-like (matK) gene, complete sequence; chloroplast.
3-5219844410906 0.818Pterogyne nitens isolate 3 sucrose synthase (sucS1) gene, exons 10 through 12 and partial cds.
4-2222226931017 0.762Gymnocladus sp. JP2 cytochrome oxidase subunit 1 (cox1) gene, partial cds; mitochondrial.
5-216381763481495 0.617Dialium sp. McKey C91-11 ribulose 1,5-bisphosphate carboxylase-oxygenase large subunit (rbcL) gene, choloroplast gene encoding chloroplast protein, partial cds.
8-66411141737 0.828Bauhinia sp. Doyle s.n. 18S ribosomal RNA gene, partial sequence.
9-7918713259530 0.750Caesalpinia pannosa isolate PANNCarter2124 psbA gene and psbA-trnH intergenic spacer, partial sequence; plastid.
27-3382284491225 0.584Brownea ariza clone A4 FLO/LFY-like protein-like gene, partial sequence.
28-62811401643391103 0.658Moullava spicata chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence.
29-15016731693908 0.949Senna obtusifolia chloroplast rpS16 gene, partial intron.
32-11166362475 0.956Hymenaea courbaril voucher NH200199 RNA polymerase beta subunit (rpoB) gene, partial cds; chloroplast.
33-16359447714 0.790Senna reticulata voucher LDV3116 RNA polymerase beta subunit (rpoC1) gene, partial cds; chloroplast.
37-13802609720 0.922Caesalpinia eriostachys acetyl-CoA carboxylase carboxyltransferase beta subunit-like (accD) gene, partial sequence; accD-psaI intergenic spacer, complete sequence; and psaI protein (psaI) gene, partial cds; plastid.
39-991046701999 0.877Senna arnottiana ribosomal protein L16 (rpL16) gene, intron; chloroplast.
41-49776580704 0.898Caesalpinia decapetala 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence.
43-663278430 0.833Erythrophleum fordii trnH-psbA intergenic spacer, partial sequence; chloroplast.
47-151910170382 0.748Caesalpinia sappan voucher PS1370MT04 Ycf5 (ycf5) gene, partial cds; chloroplast.
50-144110722836 0.980Dimorphandra conjugata isolate PP1-8 serine/threonine-protein phosphatase PP1 isozyme 4-like protein (PP1) gene, partial cds.
53-1317220952101 0.999Gymnocladus chinensis NADH dehydrogenase-like protein (ndhF) gene, chloroplast gene encoding chloroplast protein, partial cds.
54-1420310121295 0.949Gleditsia triacanthos ribosomal protein 16 large subunit (rpl16) gene, chloroplast gene encoding chloroplast protein, partial cds.
58-66612691362 0.971Delonix regia retrotransposon Ty1/copia-like, partial sequence.
87-5193366662 0.855Bauhinia guianensis clone Act-Ba8 actin-like protein (Act) gene, partial cds.
88-5193316316 1.000Eperua grandiflora clone Cam2-Eg2 calmodulin 2-like (Cam2) gene, partial sequence.
90-5153333333 1.000Eperua falcata clone Cml24-Ef3 calmodulin 24-like protein (Cml24) gene, partial cds.
91-5123380389 0.993Bauhinia purpurea clone Dg-Bp12 digalactosyldiacylglycerol synthase 1-like protein (DGS1) gene, partial cds.
93-4143500503 1.000Bauhinia guianensis clone Sam-Ba7 S-adenosylmethionine synthase-like protein (Sam) gene, partial cds.
94-5353466466 1.000Tachigali melinonii clone Se-Tm10 Sec13-like protein (Sec) gene, partial cds.
122-551612752 0.893Cassia javanica subsp. nodosa voucher PS1365MT01 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
123-315457961474 0.829Cercis siliquastrum voucher 1 May 1989, W. Roderick, s.n. (UC) trnT-trnD intergenic spacer, partial sequence; chloroplast.
124-23293233462 0.854Senna uniflora internal transcribed spacer 2, complete sequence.
148-18191633867 0.865Chamaecrista absus var. absus isolate FS7417 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
154-35382385825 0.782Chamaecrista brachystachya isolate FS1615 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
155-11121638798 0.909Senna phyllodinea internal transcribed spacer 1, partial sequence; and 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence.
178-4162492622 0.826Bauhinia guianensis clone Tub-Ba2 tubulin-like protein (Tub) gene, partial cds.
180-561592662 0.915Bauhinia acuminata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
181-661932982 0.984Bauhinia variegata atpB-rbcL intergenic spacer region, complete sequence and ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast gene for chloroplast product.
183-221477573961008 0.677Dicymbe corymbosa 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence.
204-44416921807 0.969Julbernardia globiflora voucher 4961 maturase (matR) gene, partial cds; mitochondrial.
239-13482687754 0.974Cercis chingii isolate Cchingii_921456 NADH dehydrogenase subunit F (ndhF) gene, partial cds; chloroplast.
242-1132211101213 0.980Cercis griffithii voucher P.W. Fritsch xxxx (CAS) rpoB-trnC intergenic spacer, partial sequence; chloroplast.
243-1134213261685 0.953Cercis siliquastrum voucher 1 May 1989, W. Roderick, s.n. (UC) trnS-trnG intergenic spacer and tRNA-Gly (trnG) gene, partial sequence; chloroplast.
250-552214217 0.991Lasiobema championii voucher PS1587MT01 internal transcribed spacer 2, complete sequence.
263-7813824289504 0.846Berlinia razzifera isolate DJH8525 psbA-trnH intergenic spacer, partial sequence; chloroplast.
285-15271211131353 0.883Berlinia confusa clone B20 FLO/LFY-like protein gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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