Cluster set at subtree whose root is Prionailurus (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01152616411140 0.915Prionailurus viverrinus mitochondrial cytb gene for cytochrome b, complete cds, haplotype: FVC2.
174271353810 0.898Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
284141277423 0.925Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Daichi(Inokashira Zoo stock).
337451843846 0.998Prionailurus planiceps isolate Ipl4 ZFX gene, intron.
515451725756 0.970Prionailurus bengalensis Zfy gene, intron sequence, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).
110441373373 1.000Prionailurus rubiginosa 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
12118441318318 1.000Prionailurus rubiginosa NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
1414441960960 1.000Prionailurus viverrinus Ube1y gene, exon 18 and partial cds.
1513441791841 0.971Prionailurus planiceps Smcy gene, intron 4, complete sequence.
161451839885 0.990Prionailurus rubiginosa TTR gene, partial sequence.
2117441641641 1.000Prionailurus rubiginosa APP gene, partial sequence.
2260441814817 0.998Prionailurus viverrinus CALB gene, partial sequence.
2318441326326 1.000Prionailurus rubiginosa CHRNA1 gene, partial sequence.
241944113671371 0.999Prionailurus rubiginosa CLU gene, partial sequence.
2520441517518 0.999Prionailurus rubiginosa CMA1 (CMA1) gene, partial cds.
2621441706706 1.000Prionailurus viverrinus DGKG2 gene, partial sequence.
2824441669670 0.999Prionailurus viverrinus GHR (GHR) gene, partial cds.
2925441622622 1.000Prionailurus rubiginosa GNAZ (GNAZ) gene, partial cds.
3061441674674 1.000Prionailurus rubiginosa GNB1 gene, partial sequence.
3126441341349 0.994Prionailurus viverrinus HK1 gene, partial sequence.
3227441296296 1.000Prionailurus rubiginosa NCL (NCL) gene, partial cds.
3328441290290 1.000Prionailurus planiceps PNOC (PNOC) gene, partial cds.
3429441473473 1.000Prionailurus rubiginosa RAG2 (RAG2) gene, partial cds.
3530441551551 1.000Prionailurus rubiginosa RSA2 gene, partial sequence.
3631441371371 1.000Prionailurus rubiginosa SIL gene, partial sequence.
3732441590601 0.987Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3833441513513 1.000Prionailurus viverrinus ALAS gene, partial sequence.
3934441670670 1.000Prionailurus viverrinus ATP-7A (ATP7A) gene, partial cds.
4035441318318 1.000Prionailurus rubiginosa IL2RG (IL2RG) gene, partial cds.
4136441898899 1.000Prionailurus viverrinus PLP gene, partial sequence.
423844127172737 0.997Prionailurus planiceps sex-determining region Y protein (SRY) gene, complete cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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