Cluster set at subtree whose root is Prionailurus (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01152616411140 0.915Prionailurus viverrinus mitochondrial cytb gene for cytochrome b, complete cds, haplotype: FVC2.
174271353810 0.898Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
284141277423 0.925Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Daichi(Inokashira Zoo stock).
337451843846 0.998Prionailurus planiceps isolate Ipl4 ZFX gene, intron.
4110111318318 1.000Prionailurus bengalensis DBY gene for Y-linked DBY, partial cds, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).
515451725756 0.970Prionailurus bengalensis Zfy gene, intron sequence, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).
679221963963 1.000Prionailurus iriomotensis APOB gene for apolipoprotein B, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
78622110431043 1.000Prionailurus bengalensis brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
88522110951095 1.000Prionailurus iriomotensis rag1 gene for recombination activating gene 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
91036111721274 0.935Prionailurus bengalensis interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
108722111911191 1.000Prionailurus iriomotensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
110441373373 1.000Prionailurus rubiginosa 16S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence.
12118441318318 1.000Prionailurus rubiginosa NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
13436111591181 0.993Prionailurus planiceps strain Iplx zinc finger protein Zfx (Zfx) gene, partial cds.
1414441960960 1.000Prionailurus viverrinus Ube1y gene, exon 18 and partial cds.
1513441791841 0.971Prionailurus planiceps Smcy gene, intron 4, complete sequence.
161451839885 0.990Prionailurus rubiginosa TTR gene, partial sequence.
1757111654654 1.000Prionailurus bengalensis beta fibrinogen gene, intron 7.
18911110381038 1.000Prionailurus bengalensis NADH dehydrogenase subunit 2 (NADH2) gene, partial cds; mitochondrial.
195811113681368 1.000Prionailurus bengalensis NADH dehydrogenase subunit 4 (NADH4) gene, partial cds; mitochondrial.
2056341373373 1.000Prionailurus bengalensis mitochondrial gene for 12S rRNA, partial sequence.
2117441641641 1.000Prionailurus rubiginosa APP gene, partial sequence.
2260441814817 0.998Prionailurus viverrinus CALB gene, partial sequence.
2318441326326 1.000Prionailurus rubiginosa CHRNA1 gene, partial sequence.
241944113671371 0.999Prionailurus rubiginosa CLU gene, partial sequence.
2520441517518 0.999Prionailurus rubiginosa CMA1 (CMA1) gene, partial cds.
2621441706706 1.000Prionailurus viverrinus DGKG2 gene, partial sequence.
2722331381412 0.975Prionailurus bengalensis FES gene, partial sequence.
2824441669670 0.999Prionailurus viverrinus GHR (GHR) gene, partial cds.
2925441622622 1.000Prionailurus rubiginosa GNAZ (GNAZ) gene, partial cds.
3061441674674 1.000Prionailurus rubiginosa GNB1 gene, partial sequence.
3126441341349 0.994Prionailurus viverrinus HK1 gene, partial sequence.
3227441296296 1.000Prionailurus rubiginosa NCL (NCL) gene, partial cds.
3328441290290 1.000Prionailurus planiceps PNOC (PNOC) gene, partial cds.
3429441473473 1.000Prionailurus rubiginosa RAG2 (RAG2) gene, partial cds.
3530441551551 1.000Prionailurus rubiginosa RSA2 gene, partial sequence.
3631441371371 1.000Prionailurus rubiginosa SIL gene, partial sequence.
3732441590601 0.987Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3833441513513 1.000Prionailurus viverrinus ALAS gene, partial sequence.
3934441670670 1.000Prionailurus viverrinus ATP-7A (ATP7A) gene, partial cds.
4035441318318 1.000Prionailurus rubiginosa IL2RG (IL2RG) gene, partial cds.
4136441898899 1.000Prionailurus viverrinus PLP gene, partial sequence.
423844127172737 0.997Prionailurus planiceps sex-determining region Y protein (SRY) gene, complete cds.
43111111413413 1.000Prionailurus bengalensis UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
44112111849849 1.000Prionailurus bengalensis UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
4542111260260 1.000Prionailurus bengalensis microsatellite PBE-6 sequence.
468111128128 1.000Prionailurus bengalensis isolate WII/WFC/R-474 cytochrome b (cytb) gene, partial cds; mitochondrial.
4743281237238 0.997Prionailurus bengalensis iriomotensis MHC class II DRB first extracellular domain MHCMAIR-DRB gene (DRB*0401 allele), partial cds.
48113121101101 1.000Prionailurus bengalensis mitochondrial partial 12S rRNA gene, isolate Seq14.
49114221728743 0.990Prionailurus viverrinus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
501181401362362 1.000Prionailurus bengalensis isolate LCHP45 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; mitochondrial.
511151351202202 1.000Prionailurus bengalensis isolate LCHP48 cytochrome b (cytb) gene, partial cds; mitochondrial.
5211623115031503 1.000Prionailurus bengalensis euptilura isolate PBE_31 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
538322164936534 0.997Prionailurus bengalensis clone PBE1 carboxylesterase 7-like gene, complete sequence.
5410711123102310 1.000Prionailurus bengalensis transferrin receptor protein 1 (TFRC) mRNA, complete cds.
55117111318318 1.000Prionailurus bengalensis iduronate 2-sulfatase gene, partial cds.
5623331441441 1.000Prionailurus viverrinus GATA3 gene, partial sequence.
5713222115451545 1.000Prionailurus planiceps isolate FHCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
58133221684684 1.000Prionailurus planiceps isolate FHCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
59134111784784 1.000Prionailurus planiceps isolate FHCCOIII cytochrome c oxidase subunit III (COX3) gene, partial cds; mitochondrial.
60193111791791 1.000Prionailurus bengalensis euptilurus DNA, isolate: Mk-23, 5'flanking region of Feline endogenous retrovirus ERV-DC7.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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