Cluster set at subtree whose root is Trionychoidea (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
61549279172561168 0.790Pelodiscus sp. MTD D 43357 mitochondrial cytb gene for cytochrome b and partial tRNA-Thr gene for transfer RNA-Thr, specimen voucher MTD:D 43357.
71814475577847 0.845Sternotherus odoratus recombination activating gene 1 (RAG-1) gene, partial cds.
810625876287600 0.910Nilssonia gangetica partial Cmos gene for oocyte maturation factor Mos, specimen voucher MTD:TD:3137.
91740154184691044 0.901Pelodiscus maackii partial R35 gene intron, specimen voucher MTD:TD:4236.
113887428581 0.918Sternotherus carinatus voucher HBS107736 anonymous locus TB29 genomic sequence.
141052913713282978 0.436Trionyx axenaria 12S ribosomal RNA gene, complete sequence; mitochondrial.
15117910816382851 0.900Staurotypus triporcatus recombination activating gene 1 (RAG-1) gene, partial cds.
1630377517621681 0.952Nilssonia hurum voucher AUTK15 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
17144317416477890 0.879Nilssonia nigricans mitochondrial ND4 gene (partial), tRNA-His gene, tRNA-Ser gene and tRNA-Leu gene (partial), specimen voucher MTD:TD:3417.
4471665407407 1.000Kinosternon scorpioides voucher MVZ247584 ribosomal protein L4 (RPL4) mRNA, partial cds.
4676665337339 0.998Dermatemys mawii voucher MVZ233618 ribosomal protein S14-like (RPS14) mRNA, partial sequence.
4880443489496 0.996Sternotherus carinatus voucher MVZ238123 serum/glucocorticoid regulated kinase 1 (SGK1) mRNA, partial cds.
631416106446649 0.890Kinosternon flavescens aryl hydrocarbon receptor 1 (AHR) gene, partial cds.
641427127550718 0.913Trionyx triunguis voucher Tt24 brain-derived neurotrophic factor (BDNF) gene, partial cds.
651436106581648 0.975Trionyx triunguis voucher Tt03 bone morphogenetic protein 2 (BMP2) gene, partial cds.
661486106637673 0.992Trionyx triunguis voucher Tt03 anonymous locus TB01 genomic sequence.
6823555721722 0.999Carettochelys insculpta nerve growth factor beta polypeptide (NGF) gene, partial cds.
70145555654699 0.955Kinosternon flavescens KIAA0398 protein gene, partial cds; and intron.
71149444640881 0.932Sternotherus odoratus zinc finger homeobox protein (ZEB2) gene, partial cds.
7210783843021020 0.617Nilssonia nigricans partial odc gene for ornithine decarboxylase, specimen voucher MTD:TD:3415, exons 6-7.
731648107422570 0.887Lissemys punctata andersoni 16S ribosomal RNA gene, partial sequence; mitochondrial.
758516252390403 0.984Nilssonia formosa partial odc gene intron, specimen voucher MTD:TD:5865.
76852411314311607 0.920Palea steindachneri 16S ribosomal RNA gene, complete sequence; mitochondrial.
79580442145157 0.959Lissemys punctata punctata histone H4 gene, partial sequence.
9892443562567 0.998Kinosternon scorpioides voucher MVZ247584 voltage-dependent anion channel 1 (VDAC1) mRNA, partial cds.
137884818210731145 0.950Sternotherus odoratus mitochondrial control region, complete sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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