Cluster set at subtree whose root is Pantherinae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0991838321274 0.952Neofelis nebulosa interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
11034617741095 0.948Panthera leo RAG1 gene, partial cds, isolate: HS1205.
278461933963 0.994Panthera leo APOB gene for apolipoprotein B, partial cds, isolate: HS1205.
310444110431043 1.000Panthera leo brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
410544111911191 1.000Panthera leo vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1205.
8010424245532 0.761Pardofelis marmorata voucher Pma4 16S ribosomal RNA gene, partial sequence; mitochondrial.
912612284220608 0.680Panthera pardus saxicolor haplotype az2 NADH dehydrogenase subunit 5 (nd5) gene, partial cds; mitochondrial.
1019194779885 0.940Pardofelis marmorata TTR gene, partial sequence.
11101627442151760 0.450Panthera leo isolate P88017 from Morocco cytochrome b gene, complete cds; tRNA-Thr and tRNA-Pro genes, complete sequence; and control region, partial sequence; mitochondrial.
124510211781181 0.999Neofelis nebulosa strain nnex zinc finger protein Zfx (Zfx) gene, partial cds.
14881136831044 0.937Panthera tigris altaica clone DBH0902 NADH dehydrogenase subunit 2 (NADH2) gene, complete cds; mitochondrial.
1689462929979 0.987Panthera tigris altaica G protein-coupled receptor 33 (GPR33) gene, GPR33-B allele, partial sequence.
1713774940958 0.997Neofelis nebulosa Ube1y gene, exon 18 and partial cds.
1814884724755 0.970Panthera pardus orientalis Zfy gene, intron sequence, specimen_voucher: PPA68 (National Cancer Center USA stock).
19129134785841 0.960Neofelis nebulosa Smcy gene, intron 4, complete sequence.
20568113654678 0.984Neofelis nebulosa nebulosa isolate 4_NNE beta fibrinogen (FGB) gene, intron 4.
215778313681375 0.996Neofelis nebulosa NADH dehydrogenase subunit 4 (NADH4) gene, partial cds; mitochondrial.
22586102567567 1.000Panthera pardus orientalis follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
2390442339358 0.987Panthera leo EPM2B gene repeat region, partial sequence.
27178104235332 0.954Panthera leo cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
3316673638643 0.998Neofelis nebulosa APP gene, partial sequence.
3459774815817 1.000Pardofelis marmorata CALB gene, partial sequence.
351877413681369 1.000Pardofelis marmorata CLU gene, partial sequence.
3619774517518 1.000Pardofelis marmorata CMA1 (CMA1) gene, partial cds.
3720774705708 0.997Pardofelis marmorata DGKG2 gene, partial sequence.
3821774243412 0.941Pardofelis marmorata FES gene, partial sequence.
3922774441457 0.970Pardofelis marmorata GATA3 gene, partial sequence.
4023774669670 1.000Pardofelis marmorata GHR (GHR) gene, partial cds.
4124774622622 1.000Pardofelis marmorata GNAZ (GNAZ) gene, partial cds.
4260774576674 0.979Neofelis nebulosa GNB1 gene, partial sequence.
4325774345349 0.998Pardofelis marmorata HK1 gene, partial sequence.
4426774294296 0.999Neofelis nebulosa NCL (NCL) gene, partial cds.
4527774290290 1.000Neofelis nebulosa PNOC (PNOC) gene, partial cds.
4628784430473 0.989Pardofelis marmorata RAG2 (RAG2) gene, partial cds.
4729774551551 1.000Pardofelis marmorata RSA2 gene, partial sequence.
4830774371371 1.000Pardofelis marmorata SIL gene, partial sequence.
4931774585595 0.994Panthera leo TCP1 (TCP1) gene, partial cds.
5032774508513 0.999Neofelis nebulosa ALAS gene, partial sequence.
5133774670670 1.000Pardofelis marmorata ATP-7A (ATP7A) gene, partial cds.
5234774318318 1.000Pardofelis marmorata IL2RG (IL2RG) gene, partial cds.
5335774766900 0.957Pardofelis marmorata PLP gene, partial sequence.
54368104841845 0.999Neofelis nebulosa isolate Nne27 ZFX gene, intron.
553777426592730 0.988Pardofelis marmorata sex-determining region Y protein (SRY) gene, complete cds.
57958112339948 0.759Neofelis nebulosa prion protein (PRNP) gene, complete cds.
582174432109210 0.816Panthera leo haplotype T control region, partial sequence; mitochondrial.
59611594134187 0.782Pardofelis marmorata voucher Pma5 ATPase 8 (ATP8) gene, partial cds; mitochondrial.
6292552386639 0.702Panthera leo UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
6393552749751 0.999Panthera leo UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
6464552178179 0.999Panthera leo isolate D28 CD44 gene, exon v3 and partial cds, alternatively spliced.
6541773272287 0.969Panthera tigris amoyensis microsatellite PTA sequence.
72425353237246 0.970Neofelis nebulosa MHC class II antigen (Nene-DRB) gene, Nene-DRB*1 allele, exon 2 and partial cds.
7396452878908 0.983Panthera leo isolate PleoTA4 trace amine-associated receptor 4 (TAAR4) gene, partial cds.
788277464736686 0.991Neofelis nebulosa clone NNE1 carboxylesterase 7-like gene, complete sequence.
79757132644909 0.820Panthera tigris tigris cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial.
8218855214221422 1.000Neofelis nebulosa endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
865594433031025 0.518P.leo mitochondrial 12S rRNA gene.
1102475233386428 0.964Panthera leo persica isolate 15 mitochondrial cytochrome b (cytb) gene, partial sequence.
111866302172429 0.866Neofelis diardi haplotype DIS6 D-loop, partial sequence; mitochondrial.
11281563727763 0.980Neofelis nebulosa androgen receptor (AR) gene, partial cds.
11740481609610 1.000Panthera tigris tigris specimen-voucher Menghu1 cytochrome b (cytb) gene, partial cds; mitochondrial.
12074202409554 0.909Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.
121255471336337 0.998Panthera tigris tigris specimen-voucher Menghu1 control region, partial sequence; mitochondrial.
241366663405407 0.998Neofelis nebulosa nebulosa isolate 13-15a_NNE chromosome Y DDX3Y gene, partial sequence.
242367663288290 0.994Neofelis nebulosa nebulosa isolate 13-15b_NNE chromosome Y DDX3Y gene, partial sequence.
243368663296296 1.000Panthera leo krugeri isolate 16_PLE chromosome Y DDX3Y gene, intron 16.
244369663433435 0.996Neofelis nebulosa nebulosa isolate 3_NNE chromosome Y DDX3Y gene, intron 3.
245370663287292 0.994Neofelis nebulosa nebulosa isolate 1a_NNE chromosome Y EIF1AY gene, intron 1.
246371663254254 1.000Panthera leo krugeri isolate 1b_PLE chromosome Y EIF1AY gene, intron 1.
247372663388391 0.997Neofelis nebulosa nebulosa isolate 2a_NNE chromosome Y EIF1AY gene, intron 2.
248373663377377 1.000Panthera leo krugeri isolate 2b_PLE chromosome Y EIF1AY gene, intron 2.
249374663284396 0.768Neofelis nebulosa nebulosa isolate 4_NNE chromosome Y EIF1AY gene, intron 4.
250375663339339 1.000Panthera leo krugeri isolate 8_PLE chromosome Y EIF1AY gene, intron 8.
251376663456456 1.000Panthera leo krugeri isolate 12-13_PLE chromosome Y SNCY gene, partial sequence.
252377663457457 1.000Panthera leo krugeri isolate 13-15_PLE chromosome Y SMCY gene, partial sequence.
253378663464464 1.000Panthera leo krugeri isolate 17_PLE chromosome Y SMCY gene, intron 17.
254379663464465 0.999Neofelis nebulosa nebulosa isolate 18-19_NNE chromosome Y SMCY gene, partial sequence.
255380663399400 1.000Panthera leo krugeri isolate 19-21_PLE chromosome Y SMCY gene, partial sequence.
256381663459459 1.000Panthera leo krugeri isolate 22-23_PLE chromosome Y SMCY gene, partial sequence.
257382663305305 1.000Panthera leo krugeri isolate 6_PLE chromosome Y SMCY gene, intron 6.
258383663330330 1.000Neofelis nebulosa nebulosa isolate 10_NNE chromosome Y UBE1Y gene, intron 10.
259384663189189 1.000Panthera leo krugeri isolate 13a_PLE chromosome Y USP9Y gene, intron 13.
260385663456456 1.000Panthera leo krugeri isolate 13b_PLE chromosome Y USP9Y gene, intron 13.
261386663354358 0.993Panthera leo krugeri isolate 14_PLE chromosome Y USP9Y gene, intron 14.
262387562298301 0.998Panthera leo krugeri isolate 16_PLE chromosome Y USP9Y gene, intron 16.
263388663338342 0.997Panthera leo krugeri isolate 18_PLE chromosome Y USP9Y gene, intron 18.
264389663385396 0.995Panthera leo krugeri isolate 2_PLE chromosome Y USP9Y gene, intron 2.
265390663456456 1.000Panthera leo krugeri isolate 23_PLE chromosome Y USP9Y gene, intron 23.
266391663338339 1.000Panthera leo krugeri isolate 31a_PLE chromosome Y USP9Y gene, intron 31.
267392663342346 0.997Panthera leo krugeri isolate 31b_PLE chromosome Y USP9Y gene, intron 31.
268393663456457 1.000Panthera leo krugeri isolate 34_PLE chromosome Y USP9Y gene, intron 34.
269394663378380 0.997Neofelis nebulosa nebulosa isolate 35_NNE chromosome Y USP9Y gene, intron 35.
270395663442442 1.000Panthera leo krugeri isolate 36_PLE chromosome Y USP9Y gene, intron 36.
271396663460460 1.000Panthera leo krugeri isolate 37_PLE chromosome Y USP9Y gene, intron 37.
272397663410410 1.000Panthera leo krugeri isolate 41_PLE chromosome Y USP9Y gene, intron 41.
273398663384385 1.000Panthera leo krugeri isolate 44_PLE chromosome Y USP9Y gene, intron 44.
274399663417418 1.000Panthera leo krugeri isolate 5_PLE chromosome Y USP9Y gene, intron 5.
275400663456456 1.000Panthera leo krugeri isolate 12_PLE chromosome Y UTY gene, intron 12.
276401663388394 0.994Panthera leo krugeri isolate 13_PLE chromosome Y UTY gene, intron 13.
277402663367371 0.991Neofelis nebulosa nebulosa isolate 16_NNE chromosome Y UTY gene, intron 16.
278403663351354 0.993Neofelis nebulosa nebulosa isolate 25_NNE chromosome Y UTY gene, intron 25.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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