Cluster set at subtree whose root is Felinae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00296411282614 0.604Herpailurus yaguarondi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
11273510496885 0.971Lynx pardinus TTR gene, partial sequence.
33773185188 0.997Felis margarita SINE element in Zfy gene, complete sequence.
4420401111551181 0.996Leopardus pardalis strain LpaX zinc finger protein Zfx (Zfx) gene, partial cds.
6613117564355 0.619Felis libyca mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 7.
77174364190810 0.589Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
810171067100428 0.692Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Maya(Inokashira Zoo stock).
98910610381044 0.997Lynx canadensis NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
109151978801274 0.911Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
1110134864741140 0.935Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, complete cds, haplotype: FCS7.
13122828117912567 0.387Felis libyca Smcy gene, intron 4, complete sequence.
14132727109411197 0.808Otocolobus manul Ube1y gene, exon 18 and partial cds.
1514283011713969 0.811Felis silvestris Zfy gene, intron.
1716293211639642 0.997Herpailurus yaguarondi APP gene, partial sequence.
1817293411299332 0.979Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
191829291113591373 0.997Otocolobus manul CLU gene, partial sequence.
2019282811515518 1.000Felis chaus CMA1 gene, partial sequence.
2120282811702715 0.987Catopuma badia DGKG2 gene, partial sequence.
2221272711381413 0.995Felis libyca FES gene, partial sequence.
2322282811440445 0.991Leopardus wiedii GATA3 gene, partial sequence.
2423282811665670 1.000Oncifelis colocolo GHR (GHR) gene, partial cds.
2524292911622622 1.000Prionailurus rubiginosa GNAZ (GNAZ) gene, partial cds.
2625292911206357 0.963Lynx canadensis HK1 gene, partial sequence.
2726292911294296 0.999Prionailurus rubiginosa NCL (NCL) gene, partial cds.
2827292911290290 1.000Prionailurus planiceps PNOC (PNOC) gene, partial cds.
2928293211423777 0.618Prionailurus bengalensis RAG2 (RAG2) gene, partial cds.
3029292911548552 0.998Felis nigripes RSA2 gene, partial sequence.
3130292911371372 0.998Otocolobus manul SIL gene, partial sequence.
3231282811587601 0.985Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3332292911319513 0.985Felis margarita ALAS gene, partial sequence.
3433292911670670 1.000Felis chaus ATP-7A (ATP7A) gene, partial cds.
3534292911318318 1.000Leopardus pardalis IL2RG (IL2RG) gene, partial cds.
3635282811898900 0.999Catopuma badia PLP gene, partial sequence.
3736283011823927 0.911Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
383728291118952792 0.969Herpailurus yaguarondi sex-determining region Y protein (SRY) gene, complete cds.
4039924339492604 0.782Felis silvestris isolate Fsi117 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Glu gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
4241443188269 0.914Felis silvestris bieti microsatellite FBI-5 sequence.
4342122696235238 0.999Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0302 allele, exon 2 and partial cds.
444362651376768 0.743Felis chaus endogenous feline leukemia virus clone Fch1139 3' LTR, partial sequence.
565511275371382 0.989Lynx pardinus voucher Lyp10 12S ribosomal RNA gene, partial sequence; mitochondrial.
5756665654893 0.821Otocolobus manul beta fibrinogen gene, intron 7.
585778613681378 0.995Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
6059252511813821 0.995Profelis aurata CALB gene, partial sequence.
6160252510573674 0.975Herpailurus yaguarondi GNB1 gene, partial sequence.
6867563446652 0.919Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
76757254596783 0.850Lynx lynx voucher PL-IGAB-ZI25 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
7877453321368 0.934Lynx lynx adenosine A3 receptor (ADORA3) gene, partial cds.
7978694933963 0.981Leopardus pardalis APOB gene for apolipoprotein B, partial cds, isolate: HS1229.
8079473557744 0.789Lynx canadensis brain-derived neurotrophic factor (BDNF) gene, exon 1 and partial cds.
83821414963406679 0.978Lynx lynx clone LLY1 carboxylesterase 7-like gene, complete sequence.
851035947721112 0.923Lynx canadensis recombination activating protein 1 (RAG1) gene, exon 1 and partial cds.
861044436781043 0.913Prionailurus bengalensis brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
8710545311911209 0.989Prionailurus iriomotensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
881065163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
891078175187187 1.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*7 allele, exon 2 and partial cds.
901088175218218 1.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*7 allele, exon 3 and partial cds.
102554549591024 0.963Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
10712188723102310 1.000Otocolobus manul transferrin receptor protein 1 (TFRC) mRNA, complete cds.
1119211117398490 0.865Leptailurus serval UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
11293121286361720 0.528Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
116101512415031668 0.909Lynx rufus isolate LRU_50 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
1181262826610159567 0.805Leopardus tigrinus isolate bLti55 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
121867344282437 0.917Herpailurus yaguarondi isolate J10 control region, partial sequence; mitochondrial.
123956145642950 0.854Lynx rufus prion protein (PRNP) gene, complete cds.
1327555415451545 1.000Prionailurus planiceps isolate FHCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
133138554684684 1.000Prionailurus planiceps isolate FHCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
142147443272272 1.000Lynx canadensis rhodopsin (RHO1) gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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