Cluster set at subtree whose root is Felinae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
00296411282614 0.604Herpailurus yaguarondi 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
11273510496885 0.971Lynx pardinus TTR gene, partial sequence.
223121555558 0.999Felis silvestris isolate FCSi09-6 BaEV endogenous retrovirus pol and env genes, partial sequence.
33773185188 0.997Felis margarita SINE element in Zfy gene, complete sequence.
4420401111551181 0.996Leopardus pardalis strain LpaX zinc finger protein Zfx (Zfx) gene, partial cds.
55111588588 1.000Felis silvestris CRX protein mRNA, partial cds.
6613117564355 0.619Felis libyca mitochondrial COII gene (partial), atpase8 gene, atpase6 gene (partial) and tRNA-Lys gene, isolate 7.
77174364190810 0.589Prionailurus bengalensis mitochondrial DNA, D-loop region, haplotype: FDS2.
810171067100428 0.692Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, partial cds, specimen_voucher: Maya(Inokashira Zoo stock).
98910610381044 0.997Lynx canadensis NADH dehydrogenase subunit 2 (ND2) gene, complete cds; mitochondrial.
109151978801274 0.911Lynx lynx interphotoreceptor retinoid-binding protein (irbp) gene, partial cds.
1110134864741140 0.935Prionailurus bengalensis mitochondrial cytb gene for cytochrome b, complete cds, haplotype: FCS7.
12112121301301 1.000Felis silvestris haplotype H3 mitochondrion control region, partial sequence.
13122828117912567 0.387Felis libyca Smcy gene, intron 4, complete sequence.
14132727109411197 0.808Otocolobus manul Ube1y gene, exon 18 and partial cds.
1514283011713969 0.811Felis silvestris Zfy gene, intron.
1615333431435 0.994Leopardus pardalis thyroxine-binding globulin (TBG) gene, partial sequence.
1716293211639642 0.997Herpailurus yaguarondi APP gene, partial sequence.
1817293411299332 0.979Lynx canadensis cholinergic receptor nicotinic alpha polypeptide 1 precursor (CHRNA1) gene, partial cds.
191829291113591373 0.997Otocolobus manul CLU gene, partial sequence.
2019282811515518 1.000Felis chaus CMA1 gene, partial sequence.
2120282811702715 0.987Catopuma badia DGKG2 gene, partial sequence.
2221272711381413 0.995Felis libyca FES gene, partial sequence.
2322282811440445 0.991Leopardus wiedii GATA3 gene, partial sequence.
2423282811665670 1.000Oncifelis colocolo GHR (GHR) gene, partial cds.
2524292911622622 1.000Prionailurus rubiginosa GNAZ (GNAZ) gene, partial cds.
2625292911206357 0.963Lynx canadensis HK1 gene, partial sequence.
2726292911294296 0.999Prionailurus rubiginosa NCL (NCL) gene, partial cds.
2827292911290290 1.000Prionailurus planiceps PNOC (PNOC) gene, partial cds.
2928293211423777 0.618Prionailurus bengalensis RAG2 (RAG2) gene, partial cds.
3029292911548552 0.998Felis nigripes RSA2 gene, partial sequence.
3130292911371372 0.998Otocolobus manul SIL gene, partial sequence.
3231282811587601 0.985Prionailurus bengalensis TCP1 (TCP1) gene, partial cds.
3332292911319513 0.985Felis margarita ALAS gene, partial sequence.
3433292911670670 1.000Felis chaus ATP-7A (ATP7A) gene, partial cds.
3534292911318318 1.000Leopardus pardalis IL2RG (IL2RG) gene, partial cds.
3635282811898900 0.999Catopuma badia PLP gene, partial sequence.
3736283011823927 0.911Lynx rufus isolate LR041509 X-linked zinc finger protein (ZFX) gene, intron and partial cds.
383728291118952792 0.969Herpailurus yaguarondi sex-determining region Y protein (SRY) gene, complete cds.
39383425621033 0.886Lynx canadensis voucher UAM:Mamm:24881 16S ribosomal RNA gene, partial sequence; mitochondrial.
4039924339492604 0.782Felis silvestris isolate Fsi117 NADH dehydrogenase subunit 5 (ND5) gene, partial cds; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; tRNA-Glu gene, complete sequence; and cytochrome b (cytB) gene, partial cds; mitochondrial.
414011111401140 1.000Felis silvestris isolate N51 cytochrome b (cytb) gene, complete cds; mitochondrial.
4241443188269 0.914Felis silvestris bieti microsatellite FBI-5 sequence.
4342122696235238 0.999Leopardus pardalis MHC class II DR antigen beta subunit (Lepa-DRB) gene, Lepa-DRB*0302 allele, exon 2 and partial cds.
444362651376768 0.743Felis chaus endogenous feline leukemia virus clone Fch1139 3' LTR, partial sequence.
4544141127127 1.000Felis silvestris haplotype SNG-HP-FS16 control region, partial sequence; mitochondrial.
4645111720720 1.000Cat c-myc gene, complete cds.
47462219011326 0.840Cat c-myc gene, complete cds.
484711112601260 1.000Cat c-myc gene, complete cds.
4948111633633 1.000Felis silvestris aminopeptidase N gene, partial cds.
504922111251752 0.821Cat c-sis oncogene (platelet-derived growth factor) 5' region.
515011134253425 1.000Feline mRNA for c-sis proto-oncogene for PDGF beta PDGF = platelet-derived growth factor.
5251111457457 1.000Feline mRNA for preprogastrin.
535222157327157 0.900Cat ECE1 endogenous retroviral element DNA, partial.
545311135343534 1.000Cat MHC class I protein (FLA-A-psi) pseudogene, 3' end.
5554111879879 1.000Lynx lynx H19 RNA gene, partial sequence.
565511275371382 0.989Lynx pardinus voucher Lyp10 12S ribosomal RNA gene, partial sequence; mitochondrial.
5756665654893 0.821Otocolobus manul beta fibrinogen gene, intron 7.
585778613681378 0.995Lynx canadensis NADH dehydrogenase subunit 4 (ND4) gene, complete cds; mitochondrial.
5958222567567 1.000Leopardus pardalis isolate 8 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
6059252511813821 0.995Profelis aurata CALB gene, partial sequence.
6160252510573674 0.975Herpailurus yaguarondi GNB1 gene, partial sequence.
626122229552957 1.000Lynx lynx steroid 21-hydroxylase gene, complete cds.
6362383579870 0.709Lynx lynx isolate 2 apolipoprotein B editing enzyme catalytic polypeptide-like 3C mRNA, complete cds, alternatively spliced.
64633435821119 0.688Lynx lynx apolipoprotein B editing enzyme catalytic polypeptide-like 3H mRNA, complete cds.
6564333179179 1.000Lynx lynx isolate D27 CD44 gene, exon v3 and partial cds, alternatively spliced.
6665111788788 1.000Lynx lynx angio-associated migratory cell protein (AAMP) gene, partial sequence.
6766111483483 1.000Lynx lynx desmin gene, partial cds.
6867563446652 0.919Lynx canadensis growth hormone receptor (GHR) gene, partial cds.
6968111794794 1.000Lynx lynx natural resistance associated macrophage protein (NRAMP1) gene, partial cds.
7069111840840 1.000Lynx lynx nucleoporin Nup107 gene, partial cds.
7170111387387 1.000Lynx lynx phosphodiesterase 6B gene, partial cds.
7271111845845 1.000Lynx lynx SH2 domain protein C1 gene, partial cds.
7372111443443 1.000Lynx lynx serine protease inhibitor Kazal-type 5 (SPINK5) gene, partial cds.
7473111684684 1.000Lynx lynx tyrosine aminotransferase gene, partial cds.
7574111843843 1.000Lynx lynx tyrosine aminotransferase gene, intron.
76757254596783 0.850Lynx lynx voucher PL-IGAB-ZI25 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
777635313141616 0.851Lynx lynx apolipoprotein B mRNA editing enzyme catalytic polypeptide 3 mRNA, complete cds.
7877453321368 0.934Lynx lynx adenosine A3 receptor (ADORA3) gene, partial cds.
7978694933963 0.981Leopardus pardalis APOB gene for apolipoprotein B, partial cds, isolate: HS1229.
8079473557744 0.789Lynx canadensis brain-derived neurotrophic factor (BDNF) gene, exon 1 and partial cds.
8180333672687 0.988Lynx lynx FBN1 gene, partial sequence.
8281222745748 0.998Otocolobus manul androgen receptor (AR) gene, partial cds.
83821414963406679 0.978Lynx lynx clone LLY1 carboxylesterase 7-like gene, complete sequence.
8483141810838 0.986Lynx lynx isolate HCroD control region, partial sequence; mitochondrial.
851035947721112 0.923Lynx canadensis recombination activating protein 1 (RAG1) gene, exon 1 and partial cds.
861044436781043 0.913Prionailurus bengalensis brca1 gene for breast and ovarian cancer susceptibility protein 1, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS1021.
8710545311911209 0.989Prionailurus iriomotensis vwf gene for von Willebrand factor, partial cds, specimen_voucher: personal:Hitoshi Suzuki:HS599.
881065163175221 0.859Leopardus tigrinus isolate bLti10 control region, partial sequence; mitochondrial.
891078175187187 1.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*7 allele, exon 2 and partial cds.
901088175218218 1.000Leopardus pardalis MHC class I antigen (FLA-Z) gene, FLA-Z*7 allele, exon 3 and partial cds.
9138222808817 0.995Leopardus pardalis 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
921092328261536 0.692Leopardus pardalis beta-2 adrenergic receptor (ADRB2) gene, partial cds.
93110222675675 1.000Leopardus pardalis ATP7A (ATP7A) gene, partial cds.
94111222311311 1.000Leopardus pardalis BMI1 (BMI1) gene, 3' UTR.
951122329901419 0.798Leopardus pardalis cannabinoid receptor 1 (CNR1) gene, partial cds.
96113343344405 0.925Leopardus pardalis cAMP responsive element moderator (CREM) gene, partial cds and 3' UTR.
97114222975975 1.000Leopardus pardalis EDG1 (EDG1) gene, partial cds.
98115343317317 1.000Lynx canadensis phospholipase C beta 4 (PLCB4) gene, 3' UTR.
99116222285285 1.000Leopardus pardalis prepronociceptin (PNOC) gene, partial cds.
100117252426692 0.831Leopardus pardalis tyrosinase (TYR) gene, partial cds.
101118222204204 1.000Leopardus pardalis zinc finger protein ZFX (ZFX) gene, partial cds.
102554549591024 0.963Leopardus pardalis 12S ribosomal RNA gene, partial sequence; and tRNA-Val gene, complete sequence; mitochondrial genes for mitochondrial products.
10385332900927 0.982Felis margarita Hox8 early enhancer sequence.
1041191316363 1.000Leopardus pardalis clone BCD cytochrome b gene, partial cds; mitochondrial.
10599222289291 0.997Leopardus pardalis protein tyrosine phosphatase receptor type G (PTPRG) gene, partial cds.
106120121642723 0.944Leopardus pardalis isolate AZ D-loop, partial sequence; mitochondrial.
10712188723102310 1.000Otocolobus manul transferrin receptor protein 1 (TFRC) mRNA, complete cds.
108102220210381490 0.831Leopardus pardalis clone LPAI69K major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.
1093811110621062 1.000Felis pardalis 12S ribosomal RNA gene, partial sequence, tRNA Val gene, complete sequence and 16S ribosomal RNA gene, partial sequence, mitochondrial genes encoding mitochondrial RNAs.
110122111318318 1.000Prionailurus bengalensis DBY gene for Y-linked DBY, partial cds, specimen_voucher: Palam/Yuuki(Inokashira Zoo stock).
1119211117398490 0.865Leptailurus serval UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
11293121286361720 0.528Leopardus wiedii UDP-glucuronosyltransferase (UGT1A6) pseudogene, partial sequence.
113123121101101 1.000Prionailurus bengalensis mitochondrial partial 12S rRNA gene, isolate Seq14.
114124332728743 0.991Prionailurus viverrinus internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence.
115102902141202 0.815Prionailurus bengalensis isolate LCBHD5 cytochrome b (cytb) gene, partial cds; mitochondrial.
116101512415031668 0.909Lynx rufus isolate LRU_50 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
117125111318318 1.000Prionailurus bengalensis iduronate 2-sulfatase gene, partial cds.
1181262826610159567 0.805Leopardus tigrinus isolate bLti55 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
119127111133133 1.000Felis chaus isolate WII/WFC/R-299 cytochrome b gene, partial cds; mitochondrial.
120128221538579 0.965Felis chaus VEGF165 isoform-like mRNA, partial sequence.
121867344282437 0.917Herpailurus yaguarondi isolate J10 control region, partial sequence; mitochondrial.
122129111443443 1.000Felis chaus UCHL-1 mRNA, partial cds.
123956145642950 0.854Lynx rufus prion protein (PRNP) gene, complete cds.
124130111127127 1.000Lynx canadensis microsatellite Lc106 sequence.
125131111754754 1.000Lynx canadensis microsatellite Lc109 sequence.
126132111106106 1.000Lynx canadensis microsatellite Lc110 sequence.
127133111165165 1.000Lynx canadensis microsatellite Lc111 sequence.
128134111251251 1.000Lynx canadensis microsatellite Lc118 sequence.
129135111249249 1.000Lynx canadensis microsatellite Lc120 sequence.
130136232199312 0.758Lynx canadensis isolate LY3 tooth enamel protein (AMEL) gene, exon 5 and partial cds.
131137222681681 1.000Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete cds; mitochondrial.
1327555415451545 1.000Prionailurus planiceps isolate FHCCOI cytochrome c oxidase subunit I (COX1) gene, complete cds; mitochondrial.
133138554684684 1.000Prionailurus planiceps isolate FHCCOII cytochrome c oxidase subunit II (COX2) gene, complete cds; mitochondrial.
134139333784784 1.000Prionailurus planiceps isolate FHCCOIII cytochrome c oxidase subunit III (COX3) gene, partial cds; mitochondrial.
135140222957957 1.000Lynx canadensis NADH dehydrogenase subunit 1 (ND1) gene, complete cds; mitochondrial.
136141222347347 1.000Lynx canadensis NADH dehydrogenase subunit 3 (ND3) gene, complete cds; mitochondrial.
137142222297297 1.000Lynx canadensis NADH dehydrogenase subunit 4L (ND4L) gene, complete cds; mitochondrial.
138143111320320 1.000Lynx canadensis collagen type X alpha 1 (COL10A1) gene, partial cds.
139144111434434 1.000Lynx canadensis transducin alpha 1 (GNAT1) gene, partial cds.
140145222550683 0.903Lynx canadensis Wilms tumor 1 (WT1) gene, partial cds.
141146111381381 1.000Lynx canadensis feline sarcoma protooncogene (FES) gene, partial cds.
142147443272272 1.000Lynx canadensis rhodopsin (RHO1) gene, partial cds.
143148222471477 0.994Lynx canadensis feline leukemia virus subgroup C cellular receptor 1 (FLVCR1) gene, intron 7 and partial cds.
144149111588588 1.000Lynx canadensis peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PPARGC1A) gene, promoter region and partial cds.
145150111702702 1.000Lynx rufus clone bcd1t microsatellite sequence.
146151111489489 1.000Lynx rufus clone bce5t microsatellite sequence.
147152111413413 1.000Lynx rufus clone bcg3d microsatellite sequence.
148153111495495 1.000Lynx rufus clone bcd8t microsatellite sequences.
149154111425425 1.000Lynx rufus clone bcg8t microsatellite sequence.
150155111796796 1.000Lynx rufus clone bch6t microsatellite sequence.
151156111659659 1.000Lynx rufus clone bcb12d microsatellite sequence.
152157111629629 1.000Lynx rufus clone bc1at microsatellite sequence.
153158111484484 1.000Lynx rufus clone bch8t microsatellite sequence.
154159111609609 1.000Lynx rufus clone bch7t microsatellite sequence.
155160111437437 1.000Lynx rufus clone bcg11d microsatellite sequence.
156161111698698 1.000Lynx rufus clone bcg7t microsatellite sequence.
157162111306306 1.000Lynx rufus clone bcg4t microsatellite sequences.
158163111225225 1.000Lynx rufus clone bcf9d microsatellite sequences.
159164111975975 1.000Lynx rufus clone bcf8t microsatellite sequences.
160165111566566 1.000Lynx rufus clone bcf6t microsatellite sequences.
161166111406406 1.000Lynx rufus clone bcf2d microsatellite sequence.
162167111438438 1.000Lynx rufus clone bce9d microsatellite sequence.
163168121545554 0.992Lynx rufus clone bce3d microsatellite sequence.
164169111256256 1.000Lynx rufus clone bce1d microsatellite sequences.
165170111359359 1.000Lynx rufus clone bcd9d microsatellite sequence.
166171121411505 0.907Lynx rufus clone bcc7t microsatellite sequences.
167172111705705 1.000Lynx rufus clone bcd5t microsatellite sequence.
168173111567567 1.000Lynx rufus clone bcd4t microsatellite sequence.
169174111391391 1.000Lynx rufus clone bcd1d microsatellite sequences.
170175111410410 1.000Lynx rufus clone bcc10d microsatellite sequences.
171176111428428 1.000Lynx rufus clone bcc4t microsatellite sequence.
172177111706706 1.000Lynx rufus clone bcb10d microsatellite sequence.
173178111430430 1.000Lynx rufus clone bcb9d microsatellite sequence.
174179111420420 1.000Lynx rufus clone bca12d microsatellite sequence.
175180111441441 1.000Lynx rufus clone bc8bd microsatellite sequence.
176181111389389 1.000Lynx rufus clone bc8a microsatellite sequence.
177182111440440 1.000Lynx rufus clone bc2at microsatellite sequence.
178183222738824 0.948Lynx rufus thiopurine S-methyltransferase mRNA, complete cds.
1791841381463464 0.998Lynx rufus isolate WY132 control region, partial sequence; mitochondrial.
180911217676 1.000Lynx rufus isolate PCcop3.07 16S ribosomal RNA gene, partial sequence; mitochondrial.
18190222327356 0.959Caracal caracal EPM2B gene repeat region, partial sequence.
1821852112930954 0.998Herpailurus yaguarondi melanocortin-1 receptor (MC1R) gene, complete cds.
18318633314731473 1.000Lynx pardinus thiamine transport protein 1 (SLC19A2) mRNA, complete cds.
184187111229229 1.000Leptailurus serval GTP-binding protein (RAB1A) mRNA, 3' untranslated region.
18518833314221422 1.000Leptailurus serval endogenous virus ERV-Car1 envelope protein syncytin-Car1 gene, complete cds.
1862482202323371 0.989Catopuma temminckii isolate BH_019 cytochrome b (Cytb) gene, partial cds; mitochondrial.
187249121608608 1.000Catopuma temminckii agouti signaling protein (ASIP) gene, complete cds.
188189222543732 0.871Lynx pardinus relaxin mRNA, complete cds.
18919024213831562 0.943Lynx pardinus cytochrome P450 family 19 subfamily A polypeptide 1 transcript variant 1 (CYP19A1) mRNA, complete cds.
19019135391159 0.911Lynx pardinus isolate F2 control region, partial sequence; mitochondrial.
1911921119292 1.000Lynx pardinus isolate F1 control region, partial sequence; mitochondrial.
19219323212251647 0.829Lynx pardinus 3 beta-hydroxysteroid dehydrogenase (HSD3B1) mRNA, complete cds.
193194111791791 1.000Prionailurus bengalensis euptilurus DNA, isolate: Mk-23, 5'flanking region of Feline endogenous retrovirus ERV-DC7.
19419511110511051 1.000Felis sp. NG192 DNA, INT292 locus sequence.
19519611115181518 1.000Felis sp. NG192 DNA, INT1193 locus sequence.
196197111829829 1.000Felis sp. NG192 DNA, INT1095 locus sequence.
197198111820820 1.000Felis sp. NG192 ATP6AP2 gene, INT0964 locus sequence.
19819911111001100 1.000Felis sp. NG192 FLJ21616 gene, INT1067 locus sequence.
199200111631631 1.000Felis sp. NG192 SCUBE3 gene, INT1075 locus sequence.
200201111531531 1.000Felis sp. NG192 MAEL gene, INT1111 locus sequence.
201202111250250 1.000Felis sp. NG192 EPC1 gene, INT1124 locus sequence.
20220311110261026 1.000Felis sp. NG192 COL3A1 gene, INT1167 locus sequence.
20320411112561256 1.000Felis sp. NG192 EPB41L4A gene, INT1189 locus sequence.
204205111416416 1.000Felis sp. NG192 KIF2 gene, INT1068 locus sequence.
20520611110941094 1.000Felis sp. NG192 LTBP1 gene, INT1098 locus sequence.
206207111722722 1.000Felis sp. NG192 DDX42 gene, INT1122 locus sequence.
207208111787787 1.000Felis sp. NG192 WDR44 gene, INT1233 locus sequence.
208209111718718 1.000Felis sp. NG192 NNT gene, INT276 locus sequence.
209210111696696 1.000Felis sp. NG192 ACSL5 gene, INT391 locus sequence.
210211111221221 1.000Felis silvestris silvestris voucher FSI880 interphotoreceptor retinoid-binding protein (IRBP) gene, exon 1 and partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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