Cluster set at subtree whose root is Acinonychinae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
08411132013201 1.000Acinonyx jubatus Saa1 gene for serum amyloid A 1, complete cds.
10121374382 0.990Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
2126121318318 1.000Acinonyx jubatus NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
36111191191 1.000Acinonyx jubatus ATPase 8 gene, partial cds; mitochondrial gene for mitochondrial product.
4412111781181 0.999Acinonyx jubatus strain ajuX zinc finger protein Zfx (Zfx) gene, partial cds.
571201525525 1.000Acinonyx jubatus clone Aju-12 mitochondrial control region, complete sequence.
685121902906 0.998Acinonyx jubatus Hox8 early enhancer sequence.
712111845845 1.000Acinonyx jubatus Smcy gene, intron 4, complete sequence.
842151235238 0.997Acinonyx jubatus MHC class II antigen (FLA-DRB1) gene, FLA-DRB1*ha16 allele, exon 2 and partial cds.
986131441441 1.000Acinonyx jubatus isolate S1571 control region, partial sequence; mitochondrial.
1087111261261 1.000Acinonyx jubatus isolate AJ 1976 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial.
1188111310310 1.000Acinonyx jubatus isolate AJ S1571 NADH dehydrogenase subunit 4L and NADH dehydrogenase subunit 4 genes, partial cds; mitochondrial.
1289111712712 1.000Acinonyx jubatus G protein-coupled receptor 33 (GPR33) gene, partial sequence.
1313111958958 1.000Acinonyx jubatus Ube1y gene, exon 18 and partial cds.
1414111726726 1.000Acinonyx jubatus Zfy gene, intron.
1558111567567 1.000Acinonyx jubatus isolate 5 follicle stimulating hormone receptor (FSHR) mRNA, partial cds.
1690111361361 1.000Acinonyx jubatus EPM2B gene repeat region, partial sequence.
171121836885 0.972Acinonyx jubatus TTR gene, partial sequence.
1816111640640 1.000Acinonyx jubatus APP gene, partial sequence.
1959111817817 1.000Acinonyx jubatus CALB gene, partial sequence.
2017111326326 1.000Acinonyx jubatus CHRNA1 gene, partial sequence.
211811113691369 1.000Acinonyx jubatus CLU gene, partial sequence.
2219111518518 1.000Acinonyx jubatus CMA1 (CMA1) gene, partial cds.
2320111713713 1.000Acinonyx jubatus DGKG2 gene, partial sequence.
2421111412412 1.000Acinonyx jubatus FES gene, partial sequence.
2522111441441 1.000Acinonyx jubatus GATA3 gene, partial sequence.
2623111670670 1.000Acinonyx jubatus GHR (GHR) gene, partial cds.
2724111622622 1.000Acinonyx jubatus GNAZ (GNAZ) gene, partial cds.
2860111673673 1.000Acinonyx jubatus GNB1 gene, partial sequence.
2925111349349 1.000Acinonyx jubatus HK1 gene, partial sequence.
3026111296296 1.000Acinonyx jubatus NCL (NCL) gene, partial cds.
3127111290290 1.000Acinonyx jubatus PNOC (PNOC) gene, partial cds.
3228111473473 1.000Acinonyx jubatus RAG2 (RAG2) gene, partial cds.
3329111551551 1.000Acinonyx jubatus RSA2 gene, partial sequence.
3430111371371 1.000Acinonyx jubatus SIL gene, partial sequence.
3531111590590 1.000Acinonyx jubatus TCP1 (TCP1) gene, partial cds.
3632111513513 1.000Acinonyx jubatus ALAS gene, partial sequence.
3733111670670 1.000Acinonyx jubatus ATP-7A (ATP7A) gene, partial cds.
3834111318318 1.000Acinonyx jubatus IL2RG (IL2RG) gene, partial cds.
3936111844844 1.000Acinonyx jubatus isolate Aju72 ZFX gene, intron.
403711127862786 1.000Acinonyx jubatus sex-determining region Y protein (SRY) gene, complete cds.
4138111561561 1.000Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial.
42911119191 1.000Acinonyx jubatus 16S ribosomal RNA gene, partial sequence; mitochondrial.
4392111425425 1.000Acinonyx jubatus UDP-glucuronosyltransferase 1A1 (UGT1A1) gene, exon 1 and partial cds.
4493111850850 1.000Acinonyx jubatus UDP-glucuronosyltransferase 1A6 (UGT1A6) pseudogene, exon 1.
4564111179179 1.000Acinonyx jubatus isolate D26 CD44 gene, exon v3 and partial cds, alternatively spliced.
4694111338338 1.000Acinonyx jubatus amelogenin (AMELX) gene, exon 6 and partial cds.
4795121783921 0.925Acinonyx jubatus prion protein (PRNP) gene, complete cds.
4896111899899 1.000Acinonyx jubatus isolate AjubaTA4 trace amine-associated receptor 4 (TAAR4) gene, partial cds.
4997131461547 0.947Acinonyx jubatus isolate cheetah 1 clone 1 interferon-gamma (IFNG) mRNA, complete cds.
5098111410410 1.000Acinonyx jubatus interleukin-4 mRNA, partial cds.
5177111368368 1.000Acinonyx jubatus adenosine A3 receptor (ADORA3) gene, partial cds.
5279111562562 1.000Acinonyx jubatus brain-derived neurotrophic factor (BDNF) gene, partial cds.
5380111686686 1.000Acinonyx jubatus FBN1 gene, partial sequence.
5435111898898 1.000Acinonyx jubatus PLP1 gene, partial sequence.
5599111291291 1.000Acinonyx jubatus protein tyrosine phosphatase receptor type G (PTPRG) gene, partial cds.
56100181655714 0.990Acinonyx jubatus MHC class I antigen (Acju-MHCI) gene, Acju-MHCI*06 allele, exons 2, 3 and partial cds.
5710114115031503 1.000Acinonyx jubatus isolate AJU_287 cytochrome P450 2D6 (CYP2D6) mRNA, complete cds.
588211165306530 1.000Acinonyx jubatus clone AJU1 carboxylesterase 7-like gene, complete sequence.
5975111657657 1.000Acinonyx jubatus voucher ROM:PM13130 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
6010212112921337 0.983Acinonyx jubatus jubatus clone AJUI3 major histocompatibility complex class I antigen (FLA-I) mRNA, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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