Cluster set at subtree whose root is Podocnemididae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
583883783805 0.978Podocnemis sextuberculata mitochondrial nd4 gene (partial), tRNA-His gene and tRNA-Ser gene (partial).
65893650650 1.000Erymnochelys madagascariensis isolate 1 from Madagascar cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
888893498580 0.983Podocnemis sextuberculata partial nt-3 gene for neurotrophin-3.
16844837692793 0.476Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
23128133338438 0.894Erymnochelys madagascariensis voucher MVZ238759 12S ribosomal RNA gene, partial sequence; mitochondrial.
2413811934881044 0.509Podocnemis unifilis mitochondrial partial cytb gene for cytochrome b.
276443252413 0.879Podocnemis expansa cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
310883636636 1.000Erymnochelys madagascariensis partial Rag2 gene for recombination activating gene 2.
321481139251107 0.864Erymnochelys madagascariensis voucher MVZ238759 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
651564171324520 0.913Podocnemis unifilis isolate PounA3 mitochondrial control region, partial sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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