Cluster set at subtree whose root is Podocnemididae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
01061293110421329 0.890Podocnemis expansa isolate Y45 D-loop, partial sequence; mitochondrial.
1107111393393 1.000Podocnemis expansa voucher HBS109191 anonymous locus TB17 genomic sequence.
235111582582 1.000Podocnemis expansa voucher HBS109191 anonymous locus TB29 genomic sequence.
336111678678 1.000Podocnemis expansa voucher HBS109191 anonymous locus TB81 genomic sequence.
4108111330330 1.000Podocnemis expansa mitochondrial partial D-loop, isolate PEXP1.
583883783805 0.978Podocnemis sextuberculata mitochondrial nd4 gene (partial), tRNA-His gene and tRNA-Ser gene (partial).
65893650650 1.000Erymnochelys madagascariensis isolate 1 from Madagascar cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
710912111141116 0.999Podocnemis expansa isolate Pexp-10 control region, partial sequence; mitochondrial.
888893498580 0.983Podocnemis sextuberculata partial nt-3 gene for neurotrophin-3.
9110111615615 1.000Podocnemis expansa voucher TNE 1255 SLC8A1 solute carrier family 8 member 1 (SLC8A1) gene, partial cds.
10111111597597 1.000Podocnemis expansa voucher TNE 1255 TNF receptor-associated factor 6 (TRAF6) gene, partial cds.
11112111702702 1.000Podocnemis expansa voucher TNE 1255 35 G protein-coupled receptor 149 (R35) gene, partial cds.
12113111882882 1.000Podocnemis expansa voucher TNE 1255 zinc finger homeobox protein (ZEB2) gene, partial cds.
1387363670717 0.973Erymnochelys madagascariensis brain-derived neurotrophic factor (BDNF) gene, partial cds.
14114111636636 1.000Podocnemis expansa bone morphogenetic protein 2 (BMP2) gene, partial cds.
15115111622622 1.000Podocnemis expansa follistatin-like protein 5 (FSTL5) gene, partial cds.
16844837692793 0.476Podocnemis expansa recombination activating gene 1 (RAG-1) gene, partial cds.
17116111605605 1.000Podocnemis expansa zinc finger protein 36 C3H type-like 1 (ZFP36L1) gene, partial cds.
18117111531531 1.000Podocnemis expansa endothelin converting enzyme-like protein 1 (ECEL1) gene, partial cds.
19118111549549 1.000Podocnemis expansa nerve growth factor beta polypeptide (NGFB) gene, partial cds.
20119111912912 1.000Podocnemis expansa voucher TNE 1255 caspase recruitment domain family member 4 (CARD4) gene, partial cds.
21120111585585 1.000Podocnemis expansa voucher TNE 1255 holocarboxylase synthetase (HLCS) gene, partial cds.
221212217591176 0.823Podocnemis unifilis cullin-associated and neddylation-dissociated 1 gene, partial cds.
23128133338438 0.894Erymnochelys madagascariensis voucher MVZ238759 12S ribosomal RNA gene, partial sequence; mitochondrial.
2413811934881044 0.509Podocnemis unifilis mitochondrial partial cytb gene for cytochrome b.
251221306365 0.919Podocnemis expansa oocyte maturation factor Mos (c-mos) gene, partial cds.
263343469484 0.985Podocnemis expansa 16S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.
276443252413 0.879Podocnemis expansa cytochrome c oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
28122111168168 1.000Podocnemis expansa microsatellite PE344 sequence.
29123111317317 1.000Podocnemis expansa microsatellite PE519 sequence.
30124111252252 1.000Podocnemis expansa microsatellite PE1075 sequence.
310883636636 1.000Erymnochelys madagascariensis partial Rag2 gene for recombination activating gene 2.
321481139251107 0.864Erymnochelys madagascariensis voucher MVZ238759 orphan G protein-coupled receptor R35 (R35) gene, intron 1.
3389333428440 0.991Peltocephalus dumeriliana proopiomelanocortin (POMC) mRNA, partial sequence.
34125111165165 1.000Erymnochelys madagascariensis clone 59HDZ188 microsatellite sequence.
35126121212226 0.969Erymnochelys madagascariensis clone 59HDZ397 microsatellite sequence.
36127111220220 1.000Erymnochelys madagascariensis clone 59HDZ196 microsatellite sequence.
37128111237237 1.000Erymnochelys madagascariensis clone 59HDZ234 microsatellite sequence.
38129111106106 1.000Erymnochelys madagascariensis clone 59HDZ242 microsatellite sequence.
39130111311311 1.000Erymnochelys madagascariensis clone 59HDZ327 microsatellite sequence.
40131111201201 1.000Erymnochelys madagascariensis clone 59HDZ499 microsatellite sequence.
41132111229229 1.000Erymnochelys madagascariensis clone 59HDZ669 microsatellite sequence.
42133111154154 1.000Erymnochelys madagascariensis clone 59HDZ777 microsatellite sequence.
43134111152152 1.000Erymnochelys madagascariensis clone 59HDZ897 microsatellite sequence.
44135111429429 1.000Podocnemis unifilis HBAA mRNA for alphaA-globin, complete cds.
45136111444444 1.000Podocnemis unifilis HBB mRNA for beta-globin, complete cds.
46137111164164 1.000Podocnemis unifilis clone Puni_1A5 microsatellite sequence.
47138111348348 1.000Podocnemis unifilis clone Puni_1B2 microsatellite sequence.
48139111260260 1.000Podocnemis unifilis clone Puni_1B11 microsatellite sequence.
49140111165165 1.000Podocnemis unifilis clone Puni_1C3 microsatellite sequence.
50141111136136 1.000Podocnemis unifilis clone Puni_1C9 microsatellite sequence.
51142111218218 1.000Podocnemis unifilis clone Puni_1B10 microsatellite sequence.
52143111129129 1.000Podocnemis unifilis clone Puni_1D9 microsatellite sequence.
53144111163163 1.000Podocnemis unifilis clone Puni_1D11 microsatellite sequence.
54145111166166 1.000Podocnemis unifilis clone Puni_1D12 microsatellite sequence.
55146111203203 1.000Podocnemis unifilis clone Puni_1E1 microsatellite sequence.
56147111189189 1.000Podocnemis unifilis clone Puni_1F10 microsatellite sequence.
57148111381381 1.000Podocnemis unifilis clone Puni_1H8 microsatellite sequence.
58149111171171 1.000Podocnemis unifilis clone Puni_1H9 microsatellite sequence.
59150111151151 1.000Podocnemis unifilis clone Puni_2A9 microsatellite sequence.
60151111250250 1.000Podocnemis unifilis clone Puni_2C11 microsatellite sequence.
61152111219219 1.000Podocnemis unifilis clone Puni_2D9 microsatellite sequence.
62153111157157 1.000Podocnemis unifilis clone Puni_2D10 microsatellite sequence.
63154111240240 1.000Podocnemis unifilis clone Puni_2E7 microsatellite sequence.
64155111283283 1.000Podocnemis unifilis clone Puni_2F6 microsatellite sequence.
651564171324520 0.913Podocnemis unifilis isolate PounA3 mitochondrial control region, partial sequence.
66157111102102 1.000Podocnemis unifilis homeobox protein A3 gene, partial cds.
671581115757 1.000Podocnemis unifilis homeobox protein D3 gene, partial cds.
681591115757 1.000Podocnemis unifilis homeobox protein B3 gene, partial cds.
691602421497691 0.909Podocnemis lewyana haplotype E D-loop, partial sequence; mitochondrial.
70161111702702 1.000Podocnemis unifilis butyrylcholinesterase gene, partial cds.
71162111552552 1.000Podocnemis unifilis bromodomain PHD finger transcription factor gene, partial cds.
72163111597597 1.000Podocnemis unifilis chondroadherin gene, partial cds.
73164111813813 1.000Podocnemis unifilis dolichol kinase gene, partial cds.
74165111762762 1.000Podocnemis unifilis FAT tumor suppressor-like protein 4 gene, partial cds.
75166111531531 1.000Podocnemis unifilis FIC domain-containing protein gene, partial cds.
76167111783783 1.000Podocnemis unifilis glucuronic acid epimerase gene, partial cds.
77168111522522 1.000Podocnemis unifilis G protein-coupled estrogen receptor 1 gene, partial cds.
78169111936936 1.000Podocnemis unifilis hypothetical protein gene, partial cds.
791701219661737 0.778Podocnemis unifilis KIAA1239 gene, partial cds.
8017111110561056 1.000Podocnemis unifilis ATP-dependent DNA ligase IV gene, partial cds.
81172111840840 1.000Podocnemis unifilis leucine-rich repeat neuronal protein 1 gene, partial cds.
82173111978978 1.000Podocnemis unifilis microtubule-actin crosslinking factor 1 gene, partial cds.
83174111342342 1.000Podocnemis unifilis pannexin 2 gene, partial cds.
8417511112181218 1.000Podocnemis unifilis pyruvate dehyrogenase phosphatase catalytic subunit 1 gene, partial cds.
85176111993993 1.000Podocnemis unifilis phospholipase C-like protein 2 gene, partial cds.
8617711113711371 1.000Podocnemis unifilis periplakin gene, partial cds.
87178111462462 1.000Podocnemis unifilis arginine-glutamic acid dipeptide repeat-containing protein gene, partial cds.
8817911111521152 1.000Podocnemis unifilis spastic ataxia of Charlevoix-Saguenay gene, partial cds.
891801218941698 0.763Podocnemis unifilis titin (TTN) gene, partial cds.
9018111120602060 1.000Podocnemis unifilis 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial.
9118211122082208 1.000Podocnemis unifilis sacsin (SACS) gene, partial cds.
92183111323323 1.000Podocnemis vogli mitochondrial partial D-loop.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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