Cluster set at subtree whose root is Cryptophyta (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-137319195392054 0.840Hanusia phi nucleomorph 18S ribosomal RNA gene, complete sequence.
1-3035127151490 0.701P.salina plastidal 16S ribosomal RNA.
2-213495841299 0.928Cryptomonas gyropyrenoidosa plastid partial rbcL gene for large subunit of RuBisCO, strain CCAC 0108.
5-16278487957 0.779Chroomonas sp. SAG 980-1 photosystem II reaction center protein D1 (psbA) gene, partial cds; chloroplast gene for chloroplast product.
6-442723807 0.929Geminigera cryophila strain CCMP2564 28S ribosomal RNA gene, partial sequence; nucleomorph.
7-101198421039 0.872Proteomonas sulcata tufA gene for translation elongation factor Tu, partial cds.
8-686932989 0.975Hemiselmis rufescens strain CCMP440 16S small subunit ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S large subunit ribosomal RNA gene, partial sequence; chloroplast.
9-441369369 1.000Teleaulax acuta nucleomorph gene for 18S rRNA, partial sequence.
14-152996141167 0.722Goniomonas truncata clone gtactin3 actin gene, partial cds.
16-71166551258 0.803Goniomonas truncata clone gttub6 beta tubulin mRNA, partial cds.
17-6112479581761 0.710Cryptomonas sp. M2195 5.8S rRNA gene (partial), 28S rRNA gene (partial) and ITS2, strain M2195.
26-4449041239 0.864Pyrenomonas salina glyceraldehyde-3-phosphate dehydrogenase precursor (GapC1) mRNA, nuclear gene encoding chloroplast protein, complete cds.
33-55512411395 0.968Pyrenomonas helgolandii photosystem I P700 chlorophyll A apoprotein A1 (psaA) gene, partial cds; chloroplast gene for chloroplast product.
35-4447591057 0.896Proteomonas sulcata chromoplast psbC gene for photosystem II 44 kDa reaction center protein, partial cds.
36-444798892 0.962Proteomonas sulcata chromoplast psbD gene for photosystem II D2 protein, partial cds.
39-45316532056 0.890Goniomonas truncata clone gthsp9041 Hsp90 gene, partial cds.
66-71568481399 0.809Goniomonas truncata alpha-tubulin (atub) gene, partial cds.
80-4547921061 0.929Pyrenomonas helgolandii psbO mRNA for oxygen-evolving enhancer protein, partial cds, strain: SAG 28.8.
86-66429494168 0.793Goniomonas avonlea 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
116-773912972 0.980Cryptomonas marssonii voucher HBI 3545x 23S ribosomal RNA gene, partial sequence; chloroplast.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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