Cluster set at subtree whose root is Haptophyceae (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-139171214862640 0.350Pleurochrysis carterae chloroplast genes for ribulose-1,5-bisphosphate carboxylase/oxygenase large and small subunits, complete cds.
6-53102297101039 0.716Cricosphaera roscoffensis tufA gene for translation elongation factor Tu, partial cds.
7-138676041083 0.669Emiliania huxleyi photosystem II protein D1 (psbA) gene, complete cds; chloroplast.
8-6859261530 0.798Emiliania huxleyi photosystem II 47 kDa protein (psbB) gene, complete cds; chloroplast.
13-811712222259 0.708Emiliania huxleyi photosystem I P700 apoprotein A1 (psaA) gene, complete cds; chloroplast.
15-44312421266 0.995Pavlova lutheri strain CCMP 1325 photosystem I P700 chlorophyll a apoprotein A2 (psaB) gene, partial cds; chloroplast.
18-207438382882456 0.568Platychrysis pigra genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 939/1.
20-4448321867 0.664Ochrosphaera neapolitana plastid atpB gene cluster.
23-71058971416 0.798Emiliania huxleyi photosystem II 44 kDa protein (psbC) gene, complete cds; chloroplast.
24-5648881056 0.868Emiliania huxleyi photosystem II protein D2 (psbD) gene, complete cds; chloroplast.
26-3848126961485 0.640Isochrysis sp. plastid 16S rRNA gene.
50-96204314201352 0.569Diacronema sp. CCMP610 strain CCMP 610 28S ribosomal RNA gene, partial sequence.
67-82076291095 0.782Pleurochrysis carterae clone PAC11 type 2 actin mRNA, partial cds.
90-91468751530 0.715Prymnesium parvum beta-tubulin-like gene, partial sequence.
91-1115810981228 0.942Prymnesium parvum alpha-tubulin gene, partial cds.
92-46416691893 0.923Prymnesium parvum heat shock protein 90 gene, partial cds.
130-45429604019 0.811Prymnesium patelliferum internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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