Cluster set at subtree whose root is Choanoflagellida (rel. 194)

Click to see complete taxon coverage matrix or taxon coverage by genus (very large matrices may load slowly!).
Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0-111374374 1.000Sphaeroeca volvox ribosomal protein S5 (rps5) gene, partial cds.
1-4069165032065 0.735Salpingoeca amphoridium 18S small subunit ribosomal RNA gene, partial sequence.
2-11116151615 1.000Monosiga ovata MoPTK-w mRNA for protein tyrosine kinase CSK, complete cds.
3-11159845984 1.000Monosiga ovata mRNA for receptor-type protein tyrosine kinase, complete cds.
4-11122912291 1.000Monosiga ovata MoPTK-b mRNA for protein tyrosine kinase tec, complete cds.
5-11140264026 1.000Monosiga ovata MoPTK-c mRNA for receptor-type protein tyrosine kinase, complete cds.
6-12116961781 0.976Monosiga ovata MoPTK-f mRNA for protein tyrosine kinase src, complete cds.
7-11164196419 1.000Monosiga ovata MoPTK-g mRNA for receptor-type protein tyrosine kinase, complete cds.
8-11156705670 1.000Monosiga ovata MoPTK-g2 mRNA for receptor-type protein tyrosine kinase, complete cds.
9-11126532653 1.000Monosiga ovata MoPTK-h mRNA for protein tyrosine kinase, complete cds.
10-11120302030 1.000Monosiga ovata MoPTK-j mRNA for protein tyrosine kinase, complete cds.
11-11129602960 1.000Monosiga ovata MoPTK-k mRNA for protein tyrosine kinase, complete cds.
12-11124452445 1.000Monosiga ovata MoPTK-l mRNA for protein tyrosine kinase, complete cds.
13-11134843484 1.000Monosiga ovata MoPTK-n mRNA for protein tyrosine kinase, complete cds.
14-11112651265 1.000Monosiga ovata MoPTK-o mRNA for protein tyrosine kinase, partial cds.
15-11123302330 1.000Monosiga ovata MoPTK-p mRNA for protein tyrosine kinase, complete cds.
16-11117451745 1.000Monosiga ovata MoPTK-r mRNA for protein tyrosine kinase, partial cds.
17-11132503250 1.000Monosiga ovata MoPTK-s mRNA for receptor-type protein tyrosine kinase, complete cds.
18-11137853785 1.000Monosiga ovata MoPTK-t mRNA for receptor-type protein tyrosine kinase, complete cds.
19-11157235723 1.000Monosiga ovata MoPTK-u mRNA for receptor-type protein tyrosine kinase, complete cds.
20-11128872887 1.000Monosiga ovata MoPTK-v mRNA for protein tyrosine kinase, complete cds.
21-11110001000 1.000Monosiga ovata MoPTK-z mRNA for protein tyrosine kinase HTK16, partial cds.
22-11125972597 1.000Monosiga ovata MoPTK-y mRNA for protein tyrosine kinase syk, partial cds.
23-11132023202 1.000Monosiga ovata mRNA for RNA polymerase I largest subunit, partial cds.
24-11139753975 1.000Monosiga ovata mRNA for RNA polymerase II largest subunit, partial cds.
25-11130523052 1.000Monosiga ovata mRNA for RNA polymerase III largest subunit, partial cds.
26-111994994 1.000Monosiga ovata MoGa-1 mRNA for G protein alpha subunit, partial cds.
27-11110121012 1.000Monosiga ovata MoGa-2 mRNA for G protein alpha subunit, partial cds.
28-11116931693 1.000Monosiga ovata MoPTP-02 mRNA for protein tyrosine phosphatase, complete cds.
29-11127492749 1.000Monosiga ovata MoPTP-03 mRNA for protein tyrosine phosphatase, partial cds.
30-11133123312 1.000Monosiga ovata MoPTP-04 mRNA for protein tyrosine phosphatase, complete cds.
31-11117731773 1.000Monosiga ovata MoPTP-05 mRNA for protein tyrosine phosphatase type N6, complete cds.
32-11123922392 1.000Monosiga ovata MoPTP-06 mRNA for protein tyrosine phosphatase, partial cds.
33-11110251025 1.000Monosiga ovata MoPTP-07 mRNA for protein tyrosine phosphatase, complete cds.
34-11122502250 1.000Monosiga ovata MoPTP-08 mRNA for protein tyrosine phosphatase, complete cds.
35-11120082008 1.000Monosiga ovata MoPTP-09 mRNA for protein tyrosine phosphatase, complete cds.
36-11139483948 1.000Monosiga ovata MoPTP-10 mRNA for protein tyrosine phosphatase, complete cds.
37-11112001200 1.000Monosiga ovata MoPTP-11 mRNA for protein tyrosine phosphatase, complete cds.
38-11112841284 1.000Monosiga ovata MoPTP-12 mRNA for protein tyrosine phosphatase, complete cds.
39-11129042904 1.000Monosiga ovata MoPTP-13 mRNA for protein tyrosine phosphatase, complete cds.
40-11112501250 1.000Monosiga ovata MoPTP-14 mRNA for protein tyrosine phosphatase, complete cds.
41-11111931193 1.000Monosiga ovata MoPTP-15 mRNA for protein tyrosine phosphatase, complete cds.
42-11122092209 1.000Monosiga ovata MoPTK-d mRNA for protein tyrosine kinase tec, complete cds.
43-11116391639 1.000Monosiga ovata MoPTK-e mRNA for protein tyrosine kinase src, complete cds.
44-11123142314 1.000Monosiga ovata MoRPSK1 mRNA for receptor-type protein serine/threonine kinase, complete cds.
45-11120652065 1.000Monosiga ovata Hoglet (hoglet) mRNA, complete cds.
46-111146146 1.000Monosiga ovata hoglet gene, intron 1.
47-111142142 1.000Monosiga ovata hoglet gene, intron 2.
48-11113121312 1.000Monosiga ovata arginine kinase mRNA, complete cds.
49-11115161516 1.000Monosiga ovata putative fascin type I mRNA, partial cds.
50-11115971597 1.000Monosiga ovata putative fascin type II mRNA, partial cds.
51-11114281428 1.000Monosiga ovata MoPak mRNA for serine/threonine-protein kinase PAK, complete cds.
52-121579582 0.997Monosiga ovata MoRac43 mRNA for small GTPase Rac protein 43, complete cds.
53-3429952083 0.706Monosiga brevicollis type Mb_C 70-kDa heat-shock protein-like (hsp70) mRNA, partial sequence.
54-111897897 1.000Monosiga ovata phosphofructokinase (pfk) mRNA, partial cds.
55-33310001290 0.924Salpingoeca amphoridium Ef1a gene, partial cds.
56-16171016124159 0.728Salpingoeca amphoridium 28S ribosomal RNA gene, partial sequence.
57-111777777 1.000Choanoeca perplexa 90 kDa heat-shock protein (hsp90) gene, partial cds.
58-162197541487 0.693Monosiga brevicollis alpha-tubulin mRNA, complete cds.
59-222765781 0.990Savillea micropora 90 kDa heat-shock protein (hsp90) gene, partial cds.
60-111518518 1.000Monosiga brevicollis isolate TOA4 cell division control protein 42 mRNA, partial cds.
61-111386386 1.000Monosiga brevicollis isolate TOA5 Ras-related nuclear protein mRNA, partial cds.
62-111996996 1.000Monosiga brevicollis isolate TOA6 eukaryotic translation initiation factor 2 mRNA, partial cds.
63-111327327 1.000Monosiga brevicollis isolate TOA13 succinate dehydrogenase iron-sulfur protein mRNA, partial cds.
64-111420420 1.000Monosiga brevicollis isolate TOA18 ribosomal protein 10 large subunit mRNA, partial cds.
65-111219219 1.000Monosiga brevicollis isolate TOA19 ribosomal protein 11 large subunit mRNA, partial cds.
66-111995995 1.000Monosiga brevicollis isolate TOA20 ribosomal protein 3 large subunit mRNA, partial cds.
67-111440440 1.000Monosiga brevicollis isolate TOA21 ribosomal protein 5 large subunit mRNA, partial cds.
68-111404404 1.000Monosiga brevicollis isolate TOA23 ribosomal protein 8 large subunit mRNA, partial cds.
69-111693693 1.000Monosiga brevicollis isolate TOA24 ribosomal protein P0 large subunit mRNA, partial cds.
70-111395395 1.000Monosiga brevicollis isolate TOA25 ribosomal protein 2 small subunit mRNA, partial cds.
71-111572572 1.000Monosiga brevicollis isolate TOA26 ribosomal protein 3 small subunit mRNA, partial cds.
72-111462462 1.000Monosiga brevicollis isolate TOA29 ribosomal protein 8 small subunit mRNA, partial cds.
73-111642642 1.000Monosiga brevicollis isolate TOA31 pyruvate carboxylase mRNA, partial cds.
74-111498498 1.000Monosiga brevicollis isolate TOA33 actin-related protein Arp2/3 complex subunit ARPC2 mRNA, partial cds.
75-111486486 1.000Monosiga brevicollis isolate TOA35 methylthioadenosine phosphorylase MTAP mRNA, partial cds.
76-111513513 1.000Monosiga brevicollis isolate TOA36 SNF2 family DNA-dependent ATPase domain-containing protein mRNA, partial cds.
77-111405405 1.000Monosiga brevicollis isolate TOA37 splicing factor 3b subunit 1 mRNA, partial cds.
78-111580580 1.000Monosiga brevicollis isolate TOA40 phenylalanyl-tRNA synthetase beta subunit mRNA, partial cds.
79-111699699 1.000Monosiga brevicollis isolate TOA42 RNA polymerase III large subunit mRNA, partial cds.
80-111622622 1.000Monosiga brevicollis isolate TOA51 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH mRNA, partial cds.
81-111401401 1.000Monosiga brevicollis isolate TOA53 DNA replication licensing factor MCM7 component mRNA, partial cds.
82-111923923 1.000Monosiga brevicollis isolate TOA56 chaperonin complex component TCP-1 delta subunit mRNA, partial cds.
83-111334334 1.000Monosiga brevicollis isolate TOA57 chaperonin complex component TCP-1 beta subunit mRNA, partial cds.
84-111928928 1.000Monosiga brevicollis isolate TOA62 ATPase alpha-subunit mRNA, partial cds.
85-11144074407 1.000Monosiga brevicollis RNA polymerase II second largest subunit (RPB2) gene, partial cds.
86-11113301330 1.000Monosiga brevicollis arginine kinase mRNA, complete cds.
87-1201636820 0.957Monosiga brevicollis retrotransposon pseudovirus 1.2 polyprotein (pol) gene, partial cds.
88-1241688825 0.960Monosiga brevicollis retrotransposon pseudovirus 2.6 polyprotein (pol) gene, partial cds.
89-11133253325 1.000Monosiga brevicollis strain ATCC 50154 GPS-containing G-protein-coupled receptor mRNA, complete cds.
90-111290290 1.000Monosiga brevicollis MutS-like 4 (msh4) gene, partial sequence.
91-12145884895 0.969Monosiga brevicollis voltage-gated sodium channel Nav2.1 mRNA, complete cds.
92-11160086008 1.000Monosiga brevicollis DNA-dependent RNA polymerase II largest subunit RPB1 (RPB1) gene, partial cds.
93-12137344714 0.896Monosiga brevicollis receptor tyrosine kinase (MBRTK1) mRNA, complete cds.
94-111555555 1.000Monosiga brevicollis partial vppI gene for proton-translocating inorganic pyrophosphatase.
95-81146751526 0.663Monosiga brevicollis beta-tubulin mRNA, complete cds.
96-5548471206 0.785Monosiga brevicollis actin mRNA, complete cds.
97-11115221522 1.000Monosiga brevicollis elongation factor 1 alpha long form mRNA, complete cds, alternatively spliced.
98-11129182918 1.000Monosiga brevicollis elongation factor 2 mRNA, complete cds.
99-111639639 1.000Monosiga brevicollis elongation factor 1 alpha short form mRNA, partial cds, alternatively spliced.
100-11120262026 1.000Monosiga brevicollis type Mb_ER 70-kDa heat-shock protein-like (hsp70) mRNA, partial sequence.
101-11122572257 1.000Monosiga brevicollis type Mb_M 70-kDa heat-shock protein-like (hsp70) mRNA, partial sequence.
102-44214342264 0.748Monosiga brevicollis 90-kDa heat-shock protein (hsp90) mRNA, partial cds.
103-11116661666 1.000Monosiga brevicollis MBCDH1 mRNA, partial cds.
104-11130363036 1.000Monosiga brevicollis MBCTL1 mRNA, partial cds.
105-11123152315 1.000Monosiga brevicollis MBCTL2 mRNA, partial cds.
106-11114771477 1.000Monosiga brevicollis MBSRC1 mRNA, partial cds.
107-11127282728 1.000Monosiga brevicollis MBRTK2 mRNA, partial cds.
108-11116171617 1.000Monosiga brevicollis MB7TM1 mRNA, partial cds.
109-11115941594 1.000Monosiga brevicollis MBTK3 mRNA, partial cds.
110-111630630 1.000Monosiga brevicollis triosephosphate isomerase mRNA, partial cds.
111-111519519 1.000Monosiga brevicollis phosphofructokinase mRNA, partial cds.
112-111966966 1.000Monosiga brevicollis methionine adenosyltransferase mRNA, partial cds.
113-11112781278 1.000Monosiga brevicollis ATP synthase beta subunit mRNA, partial cds.
114-111423423 1.000Salpingoeca infusionum 90 kDa heat-shock protein (hsp90) gene, partial cds.
115-111950950 1.000Codonosiga gracilis CgPTK-a mRNA for protein tyrosine kinase CSK, partial cds.
116-11122552255 1.000Codonosiga gracilis CgPTK-b mRNA for protein tyrosine kinase HTK16, complete cds.
117-11131623162 1.000Codonosiga gracilis CgPTK-c mRNA for protein tyrosine kinase fes/fps, complete cds.
118-11121932193 1.000Codonosiga gracilis CgPTK-d mRNA for protein tyrosine kinase tec, complete cds.
119-11117711771 1.000Codonosiga gracilis CgPTK-e mRNA for protein tyrosine kinase, partial cds.
120-11161426142 1.000Codonosiga gracilis CgPTK-f mRNA for receptor-type protein tyrosine kinase, complete cds.
121-11152315231 1.000Codonosiga gracilis CgPTK-g mRNA for receptor-type protein tyrosine kinase, complete cds.
122-11157605760 1.000Codonosiga gracilis CgPTK-h mRNA for receptor-type protein tyrosine kinase, partial cds.
123-11117881788 1.000Codonosiga gracilis CgPTK-j mRNA for protein tyrosine kinase, partial cds.
124-11116101610 1.000Codonosiga gracilis CgPTK-k mRNA for protein tyrosine kinase, partial cds.
125-11131873187 1.000Codonosiga gracilis CgPTK-l mRNA for receptor-type protein tyrosine kinase, complete cds.
126-11131313131 1.000Codonosiga gracilis CgPTK-t mRNA for receptor-type protein tyrosine kinase, complete cds.
127-11122762276 1.000Codonosiga gracilis CgPTK-v mRNA for protein tyrosine kinase abl, complete cds.
128-11112401240 1.000Codonosiga gracilis CgGa-1 mRNA for G protein alpha subunit, partial cds.
129-111910910 1.000Codonosiga gracilis CgGa-2 mRNA for G protein alpha subunit, partial cds.
130-11112221222 1.000Codonosiga gracilis arginine kinase mRNA, partial cds.
131-111804804 1.000Codosiga gracilis 90 kDa heat-shock protein (hsp90) gene, partial cds.
132-111862862 1.000Salpingoeca sp. abyssalis 18S ribosomal RNA gene, partial sequence.
133-221405500 0.905Monosiga sp. HFCC45 28S ribosomal RNA gene, partial sequence.
134-111504504 1.000Helgoeca nana 90 kDa heat-shock protein (hsp90) gene, partial cds.
135-11133643364 1.000Proterospongia sp. ATCC 50818 28S ribosomal RNA gene, partial sequence.
136-111756756 1.000Proterospongia sp. ATCC 50818 elongation factor 2 mRNA, partial cds.
137-111876876 1.000Proterospongia sp. ATCC 50818 90-kDa heat-shock protein (hsp90) mRNA, partial cds.
138-11114901490 1.000Proterospongia sp. ATCC 50818 PRCDH1 mRNA, partial cds.
139-2219361260 0.871Salpingoeca minuta 28S large subunit ribosomal RNA gene, partial sequence.
140-181578624 0.936Monosiga sp. ATCC 50635 retrotransposon gypsy element 1.3 polyprotein (pol) gene, partial cds.
141-11119431943 1.000Salpingoeca sp. ATCC BSE-01190019 28S large subunit ribosomal RNA gene, partial sequence.
142-11112731273 1.000Diaphanoeca grandis strain HFCC103 28S ribosomal RNA gene, partial sequence.
143-11114041404 1.000Diaphanoeca grandis strain ATCC 50111 90 kDa heat-shock protein (hsp90) gene, partial cds.
144-11132523252 1.000Stephanoeca diplocostata mRNA for RNA polymerase I largest subunit, partial cds.
145-11129972997 1.000Stephanoeca diplocostata mRNA for RNA polymerase II largest subunit, partial cds.
146-11130043004 1.000Stephanoeca diplocostata mRNA for RNA polymerase III largest subunit, partial cds.
147-11119221922 1.000Stephanoeca diplocostata SdPTK-a mRNA for protein tyrosine kinase src, complete cds.
148-11132893289 1.000Stephanoeca diplocostata SdPTK-b mRNA for receptor-type protein tyrosine kinase, partial cds.
149-11125132513 1.000Stephanoeca diplocostata SdPTK-k mRNA for protein tyrosine kinase, complete cds.
150-11113101310 1.000Stephanoeca diplocostata SdPTK-l mRNA for protein tyrosine kinase, partial cds.
151-11110331033 1.000Stephanoeca diplocostata SdGa-1 mRNA for G protein alpha subunit, partial cds.
152-121516516 1.000Stephanoeca diplocostata from Australia 90 kDa heat-shock protein (hsp90) gene, partial cds.
153-111356356 1.000Stephanoeca diplocostata partial nitrile hydratase beta-alpha subunit fusion gene.
154-111996996 1.000Stephanoeca diplocostata partial mRNA for nitrile hydratase beta-alpha subunit fusion protein.
155-11118091809 1.000Didymoeca costata 90 kDa heat-shock protein (hsp90) gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


Back to taxonomic hierarchy view