Cluster set at subtree whose root is Calcarea (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0616111960960 1.000Clathrina cerebrum methionine adenosyltransferase (MAT) mRNA, partial cds.
12344411941248 0.983Leucosolenia sp. KP-2005 elongation factor 1 alpha mRNA, partial cds.
274111792792 1.000Clathrina cerebrum catalase (Cat) mRNA, partial cds.
3617111591591 1.000Clathrina cerebrum fructose-bisphosphate aldolase (ALD) mRNA, partial cds.
46181127657311048 0.941Leucetta chagosensis 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, specimen voucher GW848_4.
561920202440470 0.980Clathrina coriacea isolate DC02 28S ribosomal RNA gene, partial sequence.
66263693111902759 0.638Scypha ciliata 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 5S rRNA gene (partial).
763222371374 0.996Clathrina cerebrum 28S ribosomal RNA, partial, 5' end.
8666399347413766 0.589Leucosolenia sp. MMM-2001 28S large subunit ribosomal RNA gene, partial sequence.
962013242720815 0.943Clathrina clathrus isolate CI21 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
1010044412452327 0.685Sycon raphanus mRNA for heat shock protein 70.
11139333644757 0.945Clathrina sp. RFW-2001 large subunit ribosomal RNA (rrnL) gene, partial sequence; mitochondrial gene for mitochondrial product.
12380111699699 1.000Clathrina sp. RFW-2001 cytochrome c oxidase subunit III gene, partial cds; mitochondrial gene for mitochondrial product.
13140111726726 1.000Clathrina sp. RFW-2001 ATP synthase F0 subunit 6 gene, complete cds; mitochondrial gene for mitochondrial product.
14621111416416 1.000Clathrina sp. RFW-2001 cytochrome c oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.
15622111939939 1.000Leucetta chagosensis partial alg11 gene for aspargine-linked glycosylation 11 protein, specimen voucher GW 945.
166231361460460 1.000Leucetta chagosensis voucher QM:G316174 cytochrome oxidase subunit 3-like (cox3) gene, partial sequence; mitochondrial.
1762412341545994 0.687Leucetta chagosensis ATPS beta subunit intron 2, specimen voucher GW830_1a.
18626111936936 1.000Clathrina sp. M1090 partial alg11 gene for aspargine-linked glycosylation 11 protein, specimen voucher M1090.
19627111639639 1.000Clathrina aurea clone Cau_A7 microsatellite sequence.
20628111585585 1.000Clathrina aurea clone Cau_B2 microsatellite sequence.
21629111672672 1.000Clathrina aurea clone Cau_C2 microsatellite sequence.
22630111621621 1.000Clathrina aurea clone Cau_D1 microsatellite sequence.
23631111628628 1.000Clathrina aurea clone Cau_D8 microsatellite sequence.
24632111335335 1.000Clathrina aurea clone Cau_E6 microsatellite sequence.
25633111438438 1.000Clathrina aurea clone Cau_G3 microsatellite sequence.
2663411155965596 1.000Clathrina clathrus chromosome 1 mitochondrion, complete sequence.
2763511168496849 1.000Clathrina clathrus chromosome 4 mitochondrion, complete sequence.
28636342759854 0.955Clathrina corallicola isolate MK1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
29637131786810 0.989Clathrina reticulum isolate CI27 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
30638111750750 1.000Clathrina tetractina isolate CI53 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
3163911112931293 1.000Sycon ciliatum Sox7 mRNA, complete cds.
3264011111011101 1.000Sycon ciliatum SoxB mRNA, complete cds.
3364111118061806 1.000Sycon ciliatum SoxC mRNA, complete cds.
3464211113201320 1.000Sycon ciliatum SoxE mRNA, complete cds.
3564311113441344 1.000Sycon ciliatum SoxF1 mRNA, complete cds.
3664411121422142 1.000Sycon ciliatum SoxF2 mRNA, complete cds.
3764511113621362 1.000Sycon ciliatum Sox6 mRNA, complete cds.
3864611115391539 1.000Sycon ciliatum SoxL1 mRNA, complete cds.
3964711114881488 1.000Sycon ciliatum SoxL2 mRNA, complete cds.
4064811114401440 1.000Sycon ciliatum SoxL3 mRNA, complete cds.
4164911115961596 1.000Sycon ciliatum SoxL4 mRNA, complete cds.
4265011129182918 1.000Sycon calcaravis mRNA for Six-C, partial cds.
43651222362446 0.906Sycon raphanus ribosomal protein S5 (rps5) gene, partial cds.
4465211114971497 1.000Sycon raphanus mRNA for carbonic anhydrase (ca gene).
45653111937937 1.000Sycon raphanus mRNA for osteoclast-stimulating factor (ostf gene).
463833211612078 0.706Sycon raphanus mRNA for beta-tubulin (tubb gene).
4765411132433243 1.000S.raphanus mRNA for serine/threonine protein kinase (CPKCSR).
4865511134553455 1.000S.raphanus mRNA for serine/threonine protein kinase (NPKCSR).
4965611138823882 1.000Sycon raphanus mRNA Fes/FER related non-receptor tyrosine kinase.
5065711120262026 1.000Sycon raphanus mRNA for insulin receptor-related protein, tyrosine kinase, clone INRSR1.
5165811121502150 1.000Sycon raphanus mRNA for insulin receptor-related protein, tyrosine kinase, clone INRSR2.
5265911114331433 1.000Sycon raphanus mRNA for insulin receptor-related protein, tyrosine kinase, clone INRSR3.
53660111545545 1.000Sycon raphanus beta-thymosin mRNA, complete cds.
5466111113621362 1.000Sycon raphanus beta-thymosin gene, complete cds.
556621318181 1.000Sycon raphanus homeobox protein Sycox2 (Sycox2) mRNA, partial cds.
566631116666 1.000Sycon raphanus homeobox protein Nkx2 (Nkx2) mRNA, partial cds.
576641116666 1.000Sycon raphanus homeobox protein NkxA (NkxA) mRNA, partial cds.
586651118787 1.000Sycon raphanus homeobox protein NkxB (NkxB) mRNA, partial cds.
59666111145145 1.000Sycon raphanus homeobox protein NkxC (NkxC) mRNA, partial cds.
60667111483483 1.000Sycon raphanus homeobox protein NkxD (NkxD) mRNA, partial cds.
6166811118811881 1.000Scypha raphanus brachyury (Bra) mRNA, complete cds.
62669131177177 1.000Sycon raphanus SOX2 (SOX2) mRNA, partial cds.
636701119090 1.000Sycon raphanus HMG5 (HMG5) mRNA, partial cds.
64671111177177 1.000Sycon raphanus HMG4 (HMG4) mRNA, partial cds.
6562511221288292 0.991Pericharax heteroraphis partial atpB gene intron 2, isolate G316100, allele 2.
6667622211491173 0.990Leucosolenia sp. alpha-tubulin mRNA, partial cds.
67677222756759 0.998Scypha sp. AR-2003 elongation factor 2 mRNA, partial cds.
6867822217161716 1.000Leucosolenia sp. 90-kDa heat-shock protein (hsp90) mRNA, partial cds.
69679391901927 0.988Ascaltis sp. QMG316051 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, specimen voucher QMG316051, clone 2.
7068013110031003 1.000Sycon capricorn 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, specimen voucher QMG316025, clone 2.
71681111588588 1.000Sycon lingua fructose-bisphosphate aldolase mRNA, partial cds.
726933312121281 0.982Leucilla nuttingi ATP synthase beta subunit (ATPB) mRNA, partial cds.
7374222789792 0.998Leucosolenia sp. KP-2005 catalase mRNA, partial cds.
74682222888957 0.964Sycon lingua methionine adenosyltransferase mRNA, partial cds.
75683111522522 1.000Sycon lingua phosphofructokinase mRNA, partial cds.
76684111630630 1.000Sycon lingua triosephosphate isomerase mRNA, partial cds.
77685111621621 1.000Sycon sp. SJB-2006 vacuolar ATP synthase subunit B mRNA, partial cds.
78686111699699 1.000Sycon sp. SJB-2006 dyskerin (DKC1) mRNA, partial cds.
79687111690690 1.000Sycon sp. SJB-2006 carnitine palmitoyltransferase family member cpt-2 mRNA, partial cds.
8068811111101110 1.000Sycon sp. ENO2 alpha enolase gene, partial cds.
81689111468468 1.000Ascandra falcata isolate DC08 28S ribosomal RNA gene, partial sequence.
82287111549549 1.000Leucettusa sp. 1 OV-2012 voucher QM G323232 18S ribosomal RNA gene, partial sequence.
83672111636636 1.000Leucilla nuttingi triosephosphate isomerase (TPI) mRNA, partial cds.
84673111519519 1.000Leucilla nuttingi phosphofructokinase (PFK) mRNA, partial cds.
85674111957957 1.000Leucilla nuttingi methionine adenosyltransferase (MAT) mRNA, partial cds.
86675111774774 1.000Leucilla nuttingi catalase (Cat) mRNA, partial cds.
87691111180180 1.000Paraleucilla magna clone Cala microsatellite sequence.
88692111270270 1.000Paraleucilla magna clone Calb microsatellite sequence.
89693111150150 1.000Paraleucilla magna clone Calc microsatellite sequence.
90694111236236 1.000Paraleucilla magna clone Cald microsatellite sequence.
91695111169169 1.000Paraleucilla magna clone Cale microsatellite sequence.
92696111159159 1.000Paraleucilla magna clone Calf microsatellite sequence.
93697111186186 1.000Paraleucilla magna clone Calg microsatellite sequence.
94698111261261 1.000Paraleucilla magna clone Calh microsatellite sequence.
95699111150150 1.000Paraleucilla magna clone Calj microsatellite sequence.
96690111279279 1.000Leucilla sp. OV-2012 voucher ZMA-POR5381 28S ribosomal RNA gene, partial sequence.
97701111743743 1.000Sycettusa cf. simplex OV-2012 voucher ZMA-POR11566 28S ribosomal RNA gene, partial sequence.
9870211114011401 1.000Petrobiona massiliana heat-shock protein Hsp70 mRNA, partial cds.
99703111474474 1.000Leucosolenia sp. AR-2003 isolate TOA4 cell division control protein 42 mRNA, partial cds.
100704111343343 1.000Leucosolenia sp. AR-2003 isolate TOA5 Ras-related nuclear protein mRNA, partial cds.
101705111363363 1.000Leucosolenia sp. AR-2003 isolate TOA6 eukaryotic translation initiation factor 2 mRNA, partial cds.
10270611110001000 1.000Leucosolenia sp. AR-2003 isolate TOA10 endoplasmic reticulum heat shock 70 kDa protein mRNA, partial cds.
103707111999999 1.000Leucosolenia sp. AR-2003 isolate TOA11 mitochondrial heat shock 70 kDa protein mRNA, partial cds; nuclear gene for mitochondrial product.
10470811110891089 1.000Leucosolenia sp. AR-2003 isolate TOA15 DNA-directed RNA polymerase II largest subunit mRNA, partial cds.
105709111418418 1.000Leucosolenia sp. AR-2003 isolate TOA18 ribosomal protein 10 large subunit mRNA, partial cds.
106710111958958 1.000Leucosolenia sp. AR-2003 isolate TOA20 ribosomal protein 3 large subunit mRNA, partial cds.
107711111402402 1.000Leucosolenia sp. AR-2003 isolate TOA21 ribosomal protein 5 large subunit mRNA, partial cds.
108712111385385 1.000Leucosolenia sp. AR-2003 isolate TOA23 ribosomal protein 8 large subunit mRNA, partial cds.
109713111351351 1.000Leucosolenia sp. AR-2003 isolate TOA25 ribosomal protein 2 small subunit mRNA, partial cds.
110714111483483 1.000Leucosolenia sp. AR-2003 isolate TOA33 actin-related protein Arp2/3 complex subunit ARPC2 mRNA, partial cds.
111715111922922 1.000Leucosolenia sp. AR-2003 isolate TOA34 gamma-glutamylcysteine synthetase mRNA, partial cds.
112716111603603 1.000Leucosolenia sp. AR-2003 isolate TOA35 methylthioadenosine phosphorylase MTAP mRNA, partial cds.
11371711111251125 1.000Leucosolenia sp. AR-2003 isolate TOA36b SWI/SNF-related matrix-associated regulator of chromatin a5 mRNA, partial cds.
114718111681681 1.000Leucosolenia sp. AR-2003 isolate TOA43 RNA polymerase III large subunit mRNA, partial cds.
11571911112121212 1.000Leucosolenia sp. AR-2003 isolate TOA46 RNA polymerase III second largest subunit mRNA, partial cds.
116720111700700 1.000Leucosolenia sp. AR-2003 isolate TOA47 RNA polymerase III second largest subunit mRNA, partial cds.
117721111728728 1.000Leucosolenia sp. AR-2003 isolate TOA48 RNA polymerase III second largest subunit mRNA, partial cds.
118722111810810 1.000Leucosolenia sp. AR-2003 isolate TOA53 DNA replication licensing factor MCM7 component mRNA, partial cds.
119723111792792 1.000Leucosolenia sp. AR-2003 isolate TOA57 chaperonin complex component TCP-1 beta subunit mRNA, partial cds.
12072411110091009 1.000Leucosolenia sp. AR-2003 isolate TOA59 P-type ATPase mRNA, partial cds.
12172511112391239 1.000Leucosolenia sp. AR-2003 isolate TOA62 ATPase alpha-subunit mRNA, partial cds.
122726111114114 1.000Leucosolenia eleanor homeobox protein sine oculis six 1/2 gene, partial cds.
123727111939939 1.000Leuconia nivea partial alg11 gene for aspargine-linked glycosylation 11 protein, specimen voucher MC3329.
124728111588588 1.000Leucosolenia sp. KP-2005 fructose-bisphosphate aldolase mRNA, partial cds.
125729111516516 1.000Leucosolenia sp. KP-2005 phosphofructokinase mRNA, partial cds.
126730111636636 1.000Leucosolenia sp. KP-2005 triosephosphate isomerase mRNA, partial cds.
127733111918918 1.000Leucosolenia complicata SoxB mRNA, complete cds.
12873411112481248 1.000Leucosolenia complicata SoxE mRNA, complete cds.
12973511112001200 1.000Leucosolenia complicata SoxF mRNA, complete cds.
13073611112601260 1.000Leucosolenia complicata Sox6 mRNA, complete cds.
13173711114311431 1.000Leucosolenia complicata SoxL1 mRNA, complete cds.
13273811117311731 1.000Leucosolenia complicata SoxL4AB mRNA, complete cds.
13373911119831983 1.000Leucosolenia complicata SoxF2 mRNA, complete cds.
134700111948948 1.000Grantessa sp. GW 974 partial alg11 gene for aspargine-linked glycosylation 11 protein, specimen voucher GW 974.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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