Cluster set at subtree whose root is Chelonioidea (rel. 194)

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Cluster ID	Parent cluster	TaxIDs	GIs	Genera	L_min	L_max	MAD¹	Defline of longest sequence
0	13	12	388	6	262	1301	0.490	Caretta caretta mitochondrial genes for tRNA-Thr, tRNA-Pro, D-loop, tRNA-Phe, partial and complete sequence.
53	105	7	18	6	317	440	0.884	Caretta caretta isolate CC_Atlantic 12S ribosomal RNA gene, partial sequence; mitochondrial.
54	164	7	27	6	509	590	0.924	Caretta caretta 16S ribosomal RNA gene, partial sequence; mitochondrial.
55	142	7	22	6	559	718	0.942	Caretta caretta isolate CC_Atlantic brain-derived neurotrophic factor (BDNF) gene, partial cds.
56	106	7	26	6	601	602	0.999	Eretmochelys imbricata isolate EI_Pacific oocyte maturation factor Mos (c-mos) gene, partial cds.
57	17	6	18	5	894	948	0.983	Caretta caretta isolate CC_Atlantic RNA fingerprint protein 35 (R35) gene, intron 1.
58	117	7	17	6	2150	2869	0.970	Caretta caretta isolate CC_Atlantic recombination activating protein 1 (RAG-1) gene, partial cds.
59	109	7	21	6	620	1196	0.809	Caretta caretta isolate CC_Atlantic recombination activating protein 2 (RAG-2) gene, partial cds.
61	30	7	35	6	521	815	0.812	Eretmochelys imbricata voucher EI-COI-P1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
62	697	4	4	4	940	940	1.000	Eretmochelys imbricata HoxD11 (HoxD11) gene, partial cds.
63	698	4	4	4	1276	1276	1.000	Eretmochelys imbricata HoxA13 (HoxA13) gene, partial cds.
64	17	5	14	5	246	439	0.969	Eretmochelys imbricata haplotype Hap5 RNA fingerprint protein 35 (R35) gene, intron.
65	699	4	9	4	468	468	1.000	Lepidochelys olivacea haplotype 9 recombination activating protein 1 (Rag1) gene, partial cds.
66	15	7	34	6	307	1264	0.552	Dermochelys coriacea cytochrome b gene, partial cds; mitochondrial.
70	703	5	15	4	371	566	0.780	Caretta caretta anonymous nuclear DNA from locus pdCM12 isolate CC98.
71	704	5	21	4	377	591	0.777	Caretta caretta anonymous nuclear DNA from locus pdCM14 isolate CC98.

¹ Maximum Alignment Density
² Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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