Cluster set at subtree whose root is Chelonioidea (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0131238862621301 0.490Caretta caretta mitochondrial genes for tRNA-Thr, tRNA-Pro, D-loop, tRNA-Phe, partial and complete sequence.
531057186317440 0.884Caretta caretta isolate CC_Atlantic 12S ribosomal RNA gene, partial sequence; mitochondrial.
541647276509590 0.924Caretta caretta 16S ribosomal RNA gene, partial sequence; mitochondrial.
551427226559718 0.942Caretta caretta isolate CC_Atlantic brain-derived neurotrophic factor (BDNF) gene, partial cds.
561067266601602 0.999Eretmochelys imbricata isolate EI_Pacific oocyte maturation factor Mos (c-mos) gene, partial cds.
57176185894948 0.983Caretta caretta isolate CC_Atlantic RNA fingerprint protein 35 (R35) gene, intron 1.
58117717621502869 0.970Caretta caretta isolate CC_Atlantic recombination activating protein 1 (RAG-1) gene, partial cds.
5910972166201196 0.809Caretta caretta isolate CC_Atlantic recombination activating protein 2 (RAG-2) gene, partial cds.
61307356521815 0.812Eretmochelys imbricata voucher EI-COI-P1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
62697444940940 1.000Eretmochelys imbricata HoxD11 (HoxD11) gene, partial cds.
6369844412761276 1.000Eretmochelys imbricata HoxA13 (HoxA13) gene, partial cds.
64175145246439 0.969Eretmochelys imbricata haplotype Hap5 RNA fingerprint protein 35 (R35) gene, intron.
65699494468468 1.000Lepidochelys olivacea haplotype 9 recombination activating protein 1 (Rag1) gene, partial cds.
661573463071264 0.552Dermochelys coriacea cytochrome b gene, partial cds; mitochondrial.
707035154371566 0.780Caretta caretta anonymous nuclear DNA from locus pdCM12 isolate CC98.
717045214377591 0.777Caretta caretta anonymous nuclear DNA from locus pdCM14 isolate CC98.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.


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