Cluster set at subtree whose root is Chelonioidea (rel. 194)

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Cluster IDParent clusterTaxIDsGIsGeneraLminLmaxMAD1Defline of longest sequenceTree2
0131238862621301 0.490Caretta caretta mitochondrial genes for tRNA-Thr, tRNA-Pro, D-loop, tRNA-Phe, partial and complete sequence.
13931115858 1.000Caretta caretta src gene for tyrosine kinase, H-type, partial cds.
23941115858 1.000Caretta caretta src gene for tyrosine kinase, R-type, partial cds.
3380262534649 0.891Caretta caretta CCOR2 gene for olfactory receptor, partial cds.
4288222555649 0.928Caretta caretta CCOR3 gene for olfactory receptor, partial cds.
5649222552649 0.925Caretta caretta CCOR4P pseudogene for olfactory receptor.
6381242543649 0.923Caretta caretta CCOR6 gene for olfactory receptor, partial cds.
7650282552649 0.944Caretta caretta CCOR8P pseudogene for olfactory receptor.
8651111649649 1.000Caretta caretta CCOR12 gene for olfactory receptor, partial cds.
9652111327327 1.000Caretta caretta CCOR13 gene for olfactory receptor, partial cds.
10653111469469 1.000Caretta caretta clone p1CcB03 microsatellite sequence.
11654111668668 1.000Caretta caretta clone p1CcF01 microsatellite sequence.
12655111610610 1.000Caretta caretta clone p1CcG02 microsatellite sequence.
13656111633633 1.000Caretta caretta clone p1CcG03 microsatellite sequence.
14657111775775 1.000Caretta caretta clone p1CcH11 microsatellite sequence.
1565811110581058 1.000Caretta caretta clone p2CcG10 microsatellite sequence.
16659111738738 1.000Caretta caretta clone p2CcH12 microsatellite sequences.
17660111477477 1.000Caretta caretta clone p5CcC08 microsatellite sequence.
18661111444444 1.000Caretta caretta clone p5CcF01 microsatellite sequence.
19662111503503 1.000Caretta caretta clone p5CcH07 microsatellite sequence.
20663111607607 1.000Caretta caretta clone p7CcB07 microsatellite sequence.
21664111306306 1.000Caretta caretta clone p7CcC04 microsatellite sequence.
22665111370370 1.000Caretta caretta clone p7CcE11 microsatellite sequence.
23666111506506 1.000Caretta caretta clone p7CcG11 microsatellite sequence.
24667111358358 1.000Caretta caretta clone p8CcE07 microsatellite sequence.
25668111799799 1.000Caretta caretta estrogen receptor a mRNA, partial cds.
26669111463463 1.000Caretta caretta clone Cc-1 microsatellite sequence.
27670111381381 1.000Caretta caretta clone Cc-2 microsatellite sequence.
28671111586586 1.000Caretta caretta clone Cc-6 microsatellite sequence.
29672111341341 1.000Caretta caretta clone Cc-8 microsatellite sequence.
30673111843843 1.000Caretta caretta clone Cc-10 microsatellite sequence.
31674111537537 1.000Caretta caretta clone Cc-13 microsatellite sequence.
32675111553553 1.000Caretta caretta clone Cc-16 microsatellite sequence.
33676111373373 1.000Caretta caretta clone Cc-17 microsatellite sequence.
34677111921921 1.000Caretta caretta clone Cc-21 microsatellite sequence.
35678111477477 1.000Caretta caretta clone Cc-22 microsatellite sequence.
36679111880880 1.000Caretta caretta clone Cc-25 microsatellite sequence.
37680111806806 1.000Caretta caretta clone Cc-28 microsatellite sequence.
38681111854854 1.000Caretta caretta clone Cc-30 microsatellite sequence.
39682111603603 1.000Caretta caretta clone Cc-32 microsatellite sequence.
40683111632632 1.000Caretta caretta clone Cc5C11 microsatellite sequence.
41684111592592 1.000Caretta caretta clone Cc7A08 microsatellite sequence.
42685111687687 1.000Caretta caretta clone Cc7C06 microsatellite sequence.
43686111692692 1.000Caretta caretta clone Cc7C08 microsatellite sequence.
44687111721721 1.000Caretta caretta clone Cc7D04 microsatellite sequence.
45688111696696 1.000Caretta caretta clone Cc7E05 microsatellite sequence.
46689111921921 1.000Caretta caretta clone Cc7F06 microsatellite sequence.
47690111835835 1.000Caretta caretta clone Cc7G01 microsatellite sequence.
48691111675675 1.000Caretta caretta clone Cc8D06 microsatellite sequence.
49692111633633 1.000Caretta caretta clone Cc1F09 microsatellite sequence.
50693111493493 1.000Caretta caretta clone Cc2F11 microsatellite sequence.
51694111475475 1.000Caretta caretta microsatellite sequence.
52695111482482 1.000Caretta caretta IL-1 beta mRNA, partial cds.
531057186317440 0.884Caretta caretta isolate CC_Atlantic 12S ribosomal RNA gene, partial sequence; mitochondrial.
541647276509590 0.924Caretta caretta 16S ribosomal RNA gene, partial sequence; mitochondrial.
551427226559718 0.942Caretta caretta isolate CC_Atlantic brain-derived neurotrophic factor (BDNF) gene, partial cds.
561067266601602 0.999Eretmochelys imbricata isolate EI_Pacific oocyte maturation factor Mos (c-mos) gene, partial cds.
57176185894948 0.983Caretta caretta isolate CC_Atlantic RNA fingerprint protein 35 (R35) gene, intron 1.
58117717621502869 0.970Caretta caretta isolate CC_Atlantic recombination activating protein 1 (RAG-1) gene, partial cds.
5910972166201196 0.809Caretta caretta isolate CC_Atlantic recombination activating protein 2 (RAG-2) gene, partial cds.
60696111491491 1.000Caretta caretta inhibin-alpha mRNA, partial cds.
61307356521815 0.812Eretmochelys imbricata voucher EI-COI-P1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial.
62697444940940 1.000Eretmochelys imbricata HoxD11 (HoxD11) gene, partial cds.
6369844412761276 1.000Eretmochelys imbricata HoxA13 (HoxA13) gene, partial cds.
64175145246439 0.969Eretmochelys imbricata haplotype Hap5 RNA fingerprint protein 35 (R35) gene, intron.
65699494468468 1.000Lepidochelys olivacea haplotype 9 recombination activating protein 1 (Rag1) gene, partial cds.
661573463071264 0.552Dermochelys coriacea cytochrome b gene, partial cds; mitochondrial.
677001119292 1.000Caretta caretta (isolate EWF4) mitochondrial microsatellite repeat.
68701111139139 1.000Caretta caretta (isolate EWF4) mitochondrial microsatellite and transfer RNA-Phe (tRNA-Phe) gene.
69702111330330 1.000Caretta caretta clone Cc117 microsatellite sequence.
707035154371566 0.780Caretta caretta anonymous nuclear DNA from locus pdCM12 isolate CC98.
717045214377591 0.777Caretta caretta anonymous nuclear DNA from locus pdCM14 isolate CC98.
727053173326427 0.978Eretmochelys imbricata clone EI locus pdCM45, anonymous nuclear DNA.
73706111652652 1.000Caretta caretta clone Ccar176 microsatellite sequence.
74165232212213 0.998Caretta caretta U17 snoRNA gene.
75707111442442 1.000Caretta caretta microsatellite Cc7 sequence.
7614232737942 0.855Lepidochelys kempii NADH dehydrogenase subunit 4 (ND4) gene, partial cds; tRNA-His and tRNA-Ser genes, complete sequence; and tRNA-Leu gene, partial sequence; mitochondrial genes for mitochondrial products.
772863133524552 0.991Dermochelys coriacea isolate LBOR14 olfactory receptor 14 gene, partial cds.
78708111537537 1.000Caretta caretta isolate LHOR3 olfactory receptor 3 pseudogene, partial sequence.
79371111522522 1.000Caretta caretta isolate LHOR4 olfactory receptor 4 pseudogene, partial sequence.
80709363543549 0.995Dermochelys coriacea isolate LBOR12 olfactory receptor 12 gene, partial cds.
81710222552552 1.000Caretta caretta isolate LHOR11 olfactory receptor 11 gene, partial cds.
82378111507507 1.000Caretta caretta isolate LHOR12 olfactory receptor 12 gene, partial cds.
83711111543543 1.000Caretta caretta isolate LHOR15 olfactory receptor 15 gene, partial cds.
84355111424424 1.000Caretta caretta 12S ribosomal RNA gene, partial sequence; mitochondrial.
85712222343357 0.980Caretta caretta cytochrome b gene, partial cds; mitochondrial.
862852192336435 0.925Eretmochelys imbricata haplotype H4 control region, partial sequence; mitochondrial.
87760111450450 1.000Eretmochelys imbricata clone Eim6 microsatellite sequence.
88761111370370 1.000Eretmochelys imbricata clone Eim8 microsatellite sequence.
89762111255255 1.000Eretmochelys imbricata clone Eim9 microsatellite sequence.
90763111370370 1.000Eretmochelys imbricata clone Eim11 microsatellite sequence.
91764111352352 1.000Eretmochelys imbricata clone Eim12 microsatellite sequence.
92765111487487 1.000Eretmochelys imbricata clone Eim17 microsatellite sequence.
93766111547547 1.000Eretmochelys imbricata clone Eim19 microsatellite sequence.
94767111649649 1.000Eretmochelys imbricata clone Eim29 microsatellite sequence.
95768111634634 1.000Eretmochelys imbricata clone Eim31 microsatellite sequence.
96769111666666 1.000Eretmochelys imbricata clone Eim38 microsatellite sequence.
97770111394394 1.000Eretmochelys imbricata clone Eim40 microsatellite sequence.
98771111255255 1.000Eretmochelys imbricata clone Eim41 microsatellite sequence.
99772111285285 1.000Eretmochelys imbricata microsatellite DNA, locus HKB07.
100773111446446 1.000Eretmochelys imbricata microsatellite DNA, locus HKB17.
101774121238263 0.952Eretmochelys imbricata microsatellite DNA, locus HKB21.
102775111606606 1.000Eretmochelys imbricata microsatellite DNA, locus HKB22.
103776111329329 1.000Eretmochelys imbricata microsatellite DNA, locus HKB24.
104777111565565 1.000Eretmochelys imbricata microsatellite DNA, locus HKB25.
105778111508508 1.000Eretmochelys imbricata microsatellite DNA, locus HKB30.
106779111471471 1.000Eretmochelys imbricata microsatellite DNA, locus HKB31.
107780111290290 1.000Eretmochelys imbricata microsatellite DNA, locus HKB32.
10815242401421 0.977Lepidochelys sp. isolate 1 cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product.
10935111394394 1.000Eretmochelys imbricata voucher MVZ233242 chromobox-like protein 3 (CBX3) mRNA, partial cds.
11061111431431 1.000Eretmochelys imbricata voucher MVZ233242 Obg-like ATPase 1 (OLA1) mRNA, partial cds.
111392111285285 1.000Eretmochelys imbricata voucher MVZ233242 proteasome subunit alpha type 6 (PSMA6) mRNA, partial cds.
112389111377377 1.000Eretmochelys imbricata voucher MVZ233242 ribosomal protein L11 (RPL11) mRNA, partial cds.
11376333338339 0.999Dermochelys coriacea voucher MVZ149844 ribosomal protein S14 (RPS14) mRNA, partial cds.
11477111387387 1.000Eretmochelys imbricata voucher MVZ233242 iron-sulfur succinate dehydrogenase complex subunit B (SDHB) mRNA, partial cds.
11583111395395 1.000Eretmochelys imbricata voucher MVZ233242 mitochondrial superoxide dismutase 2 (SOD2) mRNA, partial cds; nuclear gene for mitochondrial product.
11684111312312 1.000Eretmochelys imbricata voucher MVZ233242 signal recognition particle 54kDa (SRP54) mRNA, partial cds.
117781111233233 1.000Eretmochelys imbricata clone Ei8 microsatellite sequence.
118713111179179 1.000Lepidochelys olivacea P-450 aromatase mRNA, partial cds.
119714111597597 1.000Lepidochelys olivacea clone Tur236 microsatellite sequence.
120715111632632 1.000Lepidochelys olivacea clone Tur248 microsatellite sequence.
121716111491491 1.000Lepidochelys olivacea clone Tur364 microsatellite sequence.
122717111804804 1.000Lepidochelys olivacea clone Tur395 microsatellite sequences.
123718121449523 0.929Lepidochelys olivacea clone Tur396 microsatellite sequence.
124719111614614 1.000Lepidochelys olivacea clone Tur404 microsatellite sequence.
125720111798798 1.000Lepidochelys olivacea clone Tur_1A05 microsatellite sequence.
126721111499499 1.000Lepidochelys olivacea clone Tur_1A12 microsatellite sequences.
127722111522522 1.000Lepidochelys olivacea clone Tur_1B03 microsatellite sequences.
128723111295295 1.000Lepidochelys olivacea clone Tur_1B08(a) microsatellite sequence.
12940011130133013 1.000Lepidochelys olivacea estrogen receptor alpha (Esr1) mRNA, complete cds.
13072411114621462 1.000Lepidochelys olivacea Sox9 (Sox9) mRNA, complete cds.
131582111190190 1.000Lepidochelys olivacea 12S ribosomal RNA gene, partial sequence; mitochondrial.
132580111152152 1.000Lepidochelys olivacea histone H4-like gene, partial sequence.
133725111220220 1.000Lepidochelys olivacea 16S ribosomal RNA gene, partial sequence; mitochondrial.
134726111482482 1.000Lepidochelys olivacea doublesex and mab-3 related transcription factor 1 (Dmrt-1) mRNA, partial cds.
135727111144144 1.000Lepidochelys olivacea transcription factor SOX9 (Sox9) mRNA, partial cds.
136728111261261 1.000Lepidochelys olivacea nuclear receptor DAX1 mRNA, partial cds.
137729111567567 1.000Lepidochelys olivacea clone Tur-6 microsatellite sequence.
138730111628628 1.000Lepidochelys olivacea clone Tur-11 microsatellite sequence.
139731111780780 1.000Lepidochelys olivacea clone Tur-30 microsatellite sequence.
140732111717717 1.000Lepidochelys olivacea clone Tur-31 microsatellite sequence.
141733111473473 1.000Lepidochelys olivacea clone Tur-44 microsatellite sequence.
142734111463463 1.000Lepidochelys olivacea clone Tur-53 microsatellite sequence.
14317111417417 1.000Natator depressa isolate ND_Pacific clone 1 RNA fingerprint protein 35 (R35) gene, intron 1.
14424222340490 0.847Dermochelys coriacea glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene, intron 11 and partial cds.
145141222646646 1.000Dermochelys coriacea aryl hydrocarbon receptor 1 (AHR) gene, partial cds.
14623222686722 0.975Dermochelys coriacea nerve growth factor beta polypeptide (NGF) gene, partial cds.
147143222626626 1.000Dermochelys coriacea bone morphogenetic protein 2 (BMP2) gene, partial cds.
148144222505552 0.957Dermochelys coriacea high mobility group protein B2 (HMG-2) gene, intron and partial cds.
14916222656693 0.973Dermochelys coriacea hepatocyte nuclear factor 1-alpha (HNFAL) gene, intron 2.
150145222683696 0.991Dermochelys coriacea KIAA0398 protein gene, partial cds; and intron.
151146222673854 0.894Dermochelys coriacea proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1) gene, intron and partial cds.
152147222733735 0.999Dermochelys coriacea paired box protein (PAX1P1) gene, intron.
15318111847847 1.000Dermochelys coriacea recombination activating gene 1 (RAG-1) gene, partial cds.
154148222629666 0.972Dermochelys coriacea anonymous locus TB01 genomic sequence.
1553222571585 0.988Dermochelys coriacea anonymous locus TB29 genomic sequence.
156149222881881 1.000Dermochelys coriacea zinc finger homeobox protein (ZEB2) gene, partial cds.
157782111539539 1.000Dermochelys coriacea microsatellite Derm01 sequence.
158783111250250 1.000Dermochelys coriacea microsatellite Derm02 sequence.
159784111490490 1.000Dermochelys coriacea microsatellite Derm05 sequence.
160785111158158 1.000Dermochelys coriacea microsatellite Derm10 sequence.
161786111404404 1.000Dermochelys coriacea microsatellite Derm11 sequence.
162787111421421 1.000Dermochelys coriacea microsatellite Derm13 sequence.
163788111252252 1.000Dermochelys coriacea microsatellite Derm15 sequence.
164789111503503 1.000Dermochelys coriacea microsatellite Derm18 sequence.
165790111344344 1.000Dermochelys coriacea microsatellite Derm22 sequence.
166791111112112 1.000Dermochelys coriacea microsatellite Derm30 sequence.
167792111199199 1.000Dermochelys coriacea microsatellite Derm32 sequence.
168793111205205 1.000Dermochelys coriacea microsatellite Derm34 sequence.
169794111207207 1.000Dermochelys coriacea microsatellite Derm37 sequence.
170795111271271 1.000Dermochelys coriacea microsatellite Derm36 sequence.
171796121363363 1.000Dermochelys coriacea microsatellite Derm38 sequence.
172797111423423 1.000Dermochelys coriacea microsatellite Derm43 sequence.
173798111531531 1.000Dermochelys coriacea microsatellite Derm48 sequence.
174799111343343 1.000Dermochelys coriacea microsatellite Derm 06 sequence.
175800111213213 1.000Dermochelys coriacea microsatellite 14-5 sequence.
176801111124124 1.000Dermochelys coriacea microsatellite LB99 sequence.
177802111125125 1.000Dermochelys coriacea microsatellite LB106 sequence.
178803111193193 1.000Dermochelys coriacea microsatellite LB110 sequence.
179804111177177 1.000Dermochelys coriacea microsatellite LB123 sequence.
180805111194194 1.000Dermochelys coriacea microsatellite LB125 sequence.
181806111164164 1.000Dermochelys coriacea microsatellite LB128 sequence.
182807111171171 1.000Dermochelys coriacea microsatellite LB133 sequence.
183808111168168 1.000Dermochelys coriacea microsatellite LB141 sequence.
184809111237237 1.000Dermochelys coriacea microsatellite LB142 sequence.
185810111185185 1.000Dermochelys coriacea microsatellite LB143 sequence.
186811111164164 1.000Dermochelys coriacea microsatellite LB145 sequence.
187812111101101 1.000Dermochelys coriacea microsatellite LB157 sequence.
188813111173173 1.000Dermochelys coriacea microsatellite LB158 sequence.
189814111549549 1.000Dermochelys coriacea isolate LBOR3 olfactory receptor 3 pseudogene, partial sequence.
190291111540540 1.000Dermochelys coriacea isolate LBOR4 olfactory receptor 4 gene, partial cds.
191379111552552 1.000Dermochelys coriacea isolate LBOR5 olfactory receptor 5 pseudogene, partial sequence.
192298111555555 1.000Dermochelys coriacea isolate LBOR7 olfactory receptor 7 pseudogene, partial sequence.
193815111507507 1.000Dermochelys coriacea isolate LBOR9 olfactory receptor 9 pseudogene, partial sequence.
194376111558558 1.000Dermochelys coriacea isolate LBOR11 olfactory receptor 11 gene, partial cds.
195371111552552 1.000Dermochelys coriacea isolate LBOR13 olfactory receptor 13 gene, partial cds.

  1 Maximum Alignment Density
   2 Trees are unrooted RAxML trees based on Muscle alignments. Expect performance to deteriorate with low MAD scores, large number of taxa, and high sequence divergence (largely owing to alignment problems). Only trees for (taxon) phylogenetically informative clusters with fewer than 1000 sequences are generated.

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